RetrogeneDB ID: | retro_sscr_218 | ||
Retrocopylocation | Organism: | Pig (Sus scrofa) | |
Coordinates: | 10:14945588..14945989(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MSRB2 | ||
Ensembl ID: | ENSSSCG00000011077 | ||
Aliases: | None | ||
Description: | methionine sulfoxide reductase B2 [Source:HGNC Symbol;Acc:17061] |
Percent Identity: | 72.59 % |
Parental protein coverage: | 73.63 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | LSKSEWQKKLTPEQFHVTREKGTEPPFSGTYLNNKEAGMYHCVCCDS-PLFSSEKKYCSGTGWPSFSEAH |
L...EWQ.KLT..QF.V.REKG.E..FSGTYL.NKEAGM..CV.CDS..LF..E.KY.SGTGWPSFSEAH | |
Retrocopy | LQE*EWQEKLTRQQFPVRREKGMEQLFSGTYLPNKEAGMCRCVHCDS<SLFTAEEKYFSGTGWPSFSEAH |
Parental | GTSGSDESDTGILRRVDTSLGTARTEVVCKQCEAHLGHVFPDGPGPTGQRFCINSVALKFKPRKH |
GTSGSDE.D.GILRRVDTSLG.A..EVVCKQCEAHLGHVFPDGPG..G.R..INSVAL.....K. | |
Retrocopy | GTSGSDEGDPGILRRVDTSLGPAGPEVVCKQCEAHLGHVFPDGPGHSGHRVRINSVALTVSSGKY |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP014902_placenta | 0 .00 RPM | 3 .72 RPM |
SRP014902_testis | 0 .00 RPM | 22 .77 RPM |
SRP018288_heart | 0 .00 RPM | 27 .50 RPM |
SRP018288_kidney | 0 .30 RPM | 24 .53 RPM |
SRP018288_liver | 0 .00 RPM | 15 .83 RPM |
SRP018288_lung | 0 .61 RPM | 20 .06 RPM |
SRP018856_adipose | 0 .00 RPM | 23 .28 RPM |
SRP035408_brain | 0 .00 RPM | 27 .92 RPM |
SRP035408_liver | 0 .00 RPM | 14 .82 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000006388 | 1 retrocopy | |
Canis familiaris | ENSCAFG00000004215 | 1 retrocopy | |
Equus caballus | ENSECAG00000013072 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000012892 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000002148 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000011077 | 1 retrocopy |
retro_sscr_218 ,
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