RetrogeneDB ID: | retro_cfam_1183 | ||
Retrocopylocation | Organism: | Dog (Canis familiaris) | |
Coordinates: | 25:23716241..23717353(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSCAFG00000012160 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 90.72 % |
Parental protein coverage: | 56.04 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | PPTSYPPQTGSYSQAPSQYSQQSSSYGQQSSFRQDHPSSMGVYGQESGGFSGPGENRSMSGPDNRGRGRG |
PPTSYPPQTGSYSQAPSQYSQQSSSYGQQSSFRQDHPSSMGVYGQESGGFSGPGENRS.SGPDNRGRGRG | |
Retrocopy | PPTSYPPQTGSYSQAPSQYSQQSSSYGQQSSFRQDHPSSMGVYGQESGGFSGPGENRSKSGPDNRGRGRG |
Parental | GFDRGGMSRGGRGGGRGGMGSAGERGGFNKPGGPMDEGPDLDKGPPVDPDEDSDNSAIYVQGLNDNVTLD |
GFDRGGMSRGGRGGG.GGMG.AGERGGFNKPGGPMDEGPDLD.GPPVDPDEDSDNSAIYVQGLNDNVTLD | |
Retrocopy | GFDRGGMSRGGRGGGCGGMG-AGERGGFNKPGGPMDEGPDLDLGPPVDPDEDSDNSAIYVQGLNDNVTLD |
Parental | DLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQGSKLKVSLA |
D.ADFFKQCGVVKMNKRTG.PMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQGSKLKVSLA | |
Retrocopy | DPADFFKQCGVVKMNKRTGRPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQGSKLKVSLA |
Parental | RKKPPMNSMRGGMPPREGRGMPPPLRGGPGGPGGPGGPMGRMGGRGGDRGGF-PPRGPRGSRGNPSGGGN |
RKKPPMNSMRGGMPPREGRGMPPP..............MGRMGG.GGDRGGF.PPRGPRGSR.NPSGGG. | |
Retrocopy | RKKPPMNSMRGGMPPREGRGMPPPXXXXXXXXXXXXXXMGRMGGLGGDRGGF<PPRGPRGSRENPSGGGT |
Parental | VQHRAGDWQCPNPGCGNQNFAWRTECNQCKAPKPEGFLPPPFPPPGGDRGRGGPGGMRGGRGGLMDRGGP |
VQ.RAGDWQCPNPGCGNQNFAWRTECNQ.KAP.PEGFLPPPFPPPG....RGGPGG..GGRGGL.DRGGP | |
Retrocopy | VQRRAGDWQCPNPGCGNQNFAWRTECNQGKAPRPEGFLPPPFPPPG----RGGPGGLPGGRGGLRDRGGP |
Parental | GGMFRGGRGGDRGGFRGGRGMDRGGFG |
GGMFRGGRGGDRGGFRGGRG.DRGGFG | |
Retrocopy | GGMFRGGRGGDRGGFRGGRGLDRGGFG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012049_cerebellum | 0 .38 RPM | 77 .74 RPM |
SRP017611_brain | 0 .16 RPM | 36 .04 RPM |
SRP017611_kidney | 0 .26 RPM | 45 .24 RPM |
SRP017611_liver | 0 .00 RPM | 33 .94 RPM |