RetrogeneDB ID: | retro_cfam_1889 | ||
Retrocopylocation | Organism: | Dog (Canis familiaris) | |
Coordinates: | 7:71335274..71336534(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSCAFG00000020336 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSCAFG00000012160 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 98.34 % |
Parental protein coverage: | 62.74 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | PPTSYPPQTGSYSQAPSQYSQQSSSYGQQSSFRQDHPSSMGVYGQESGGFSGPGENRSMSGPDNRGRGRG |
PPTSYPPQTGSYSQAPSQYSQQSSSYGQQSSFRQDHPSSMGVYGQESGGFSGPGENRSMSGPDNRGRGRG | |
Retrocopy | PPTSYPPQTGSYSQAPSQYSQQSSSYGQQSSFRQDHPSSMGVYGQESGGFSGPGENRSMSGPDNRGRGRG |
Parental | GFDRGGMSRGGRGGGRGGMGSAGERGGFNKPGGPMDEGPDLDKGPPVDPDEDSDNSAIYVQGLNDNVTLD |
GFDRGG.SRGGRGGGRGGMGSAGERGGFNKPGGPMDEGPDLD.GPPVDPDEDSDNSAIYVQGLNDNVTLD | |
Retrocopy | GFDRGGISRGGRGGGRGGMGSAGERGGFNKPGGPMDEGPDLDLGPPVDPDEDSDNSAIYVQGLNDNVTLD |
Parental | DLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQGSKLKVSLA |
DLADFFKQCGVVKM.KRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQGSKLKVSLA | |
Retrocopy | DLADFFKQCGVVKM-KRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQGSKLKVSLA |
Parental | RKKPPMNSMRGGMPPREGRGMPPPLRGGPGGPGGPGGPMGRMGGRGGDRGGFPPRGPRGSRGNPSGGGNV |
RKKPPMNSMRGGMPPREGRGMP.PLRGGPGGPGGPGGPMGRMGGRGGDRGGFPPRG.RGSRGNPSGGGNV | |
Retrocopy | RKKPPMNSMRGGMPPREGRGMPLPLRGGPGGPGGPGGPMGRMGGRGGDRGGFPPRGTRGSRGNPSGGGNV |
Parental | QHRAGDWQCPNPGCGNQNFAWRTECNQCKAPKPEGFLPPPFPPPGGDRGRGGPGGMRGGRGGLMDRGGPG |
QHRAGDW.CPNPGCGNQNFAWRTECNQCKAPKPEGFLPPPFPPPGGDRGRGGPGGMRGGRGGLMDRGG.G | |
Retrocopy | QHRAGDWRCPNPGCGNQNFAWRTECNQCKAPKPEGFLPPPFPPPGGDRGRGGPGGMRGGRGGLMDRGGTG |
Parental | GMFRGGRGGDRGGFRGGRGMDRGGFGGGRRGGPGGPPGPLMEQMGGRRGGRGGPGKMDKGEHRQERRDRP |
GMFRGGRGGDRGGFRGGRGMDRGGFGGGRRGGPGGPPGPLMEQMGGRRGGRGGPGKMDKGEHRQERRDRP | |
Retrocopy | GMFRGGRGGDRGGFRGGRGMDRGGFGGGRRGGPGGPPGPLMEQMGGRRGGRGGPGKMDKGEHRQERRDRP |
Parental | Y |
Y | |
Retrocopy | Y |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012049_cerebellum | 0 .80 RPM | 77 .74 RPM |
SRP017611_brain | 0 .64 RPM | 36 .04 RPM |
SRP017611_kidney | 0 .40 RPM | 45 .24 RPM |
SRP017611_liver | 0 .22 RPM | 33 .94 RPM |