RetrogeneDB ID: | retro_cfam_1736 | ||
Retrocopylocation | Organism: | Dog (Canis familiaris) | |
Coordinates: | 5:42141393..42142639(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSCAFG00000001949 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSCAFG00000012160 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 91.04 % |
Parental protein coverage: | 62.74 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 3 |
Parental | PPTSYPPQTGSYSQAPSQYSQQSSSYGQQSSFRQDHP-SSMGVYGQESGGFSGPGENRSMSGPDNRGRGR |
PPTSYPPQTG.YSQAPSQYSQQSSSYGQQSSFRQDHP.SSMGVYGQESG.FSGPGEN.SMSGPDNRGRGR | |
Retrocopy | PPTSYPPQTGYYSQAPSQYSQQSSSYGQQSSFRQDHP>SSMGVYGQESGRFSGPGENWSMSGPDNRGRGR |
Parental | GGFD-RGGMSRGGRGGGRGGMGSAGER-GGFNKPGGPMDEGPDLDKGPPVDPDEDSDNSAIYVQGLNDNV |
GGFD..GGMSRGGRGGG.GGMGS.GE..GGFNKPGGPMDEGPDLD.GPPVDPDEDSDNS.IYVQGLNDNV | |
Retrocopy | GGFD<SGGMSRGGRGGGHGGMGSTGEL>GGFNKPGGPMDEGPDLDLGPPVDPDEDSDNSVIYVQGLNDNV |
Parental | TLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQGSKLKV |
TLDDLADFFKQCGVVKMNKR.GQPMIH.YLDKE..KPKGDATVSYE.PPTAKAAVEWF.GKDFQGSKLKV | |
Retrocopy | TLDDLADFFKQCGVVKMNKRIGQPMIHTYLDKEIEKPKGDATVSYEHPPTAKAAVEWFAGKDFQGSKLKV |
Parental | SLARKKPPMNSMRGGMPPREGRGMPPPLRGGPGGPGGPGGPMGRMGGRGGDRGGFPPRGPRGSRGNPSGG |
SLARKKPPMNSMRGGMPP.EGRGMPPPLRGGPGGP.G....MG..GG...DRGGFPPRGPRGSRGNPSGG | |
Retrocopy | SLARKKPPMNSMRGGMPPHEGRGMPPPLRGGPGGPMG---RMGGRGG---DRGGFPPRGPRGSRGNPSGG |
Parental | GNVQHRAGDWQCPNPGCGNQNFAWRTECNQCKAPKPEGFLPPPFPPPGGDRGRGGPGGMRGGRGGLMDRG |
GNVQ.RAGDWQCPN.GCGN.NF.WRT.CNQCKAPKPEGFLPPPFPPPGGDRGRGGPGG.RGGRGGLMDRG | |
Retrocopy | GNVQLRAGDWQCPNSGCGNRNFTWRT*CNQCKAPKPEGFLPPPFPPPGGDRGRGGPGGLRGGRGGLMDRG |
Parental | GPGGMFRGGRGGDRGGFRGGRGMDRGGFGGGRRGGPGGPPGPLMEQMGGRRGGRGGPGKMDKGEHRQERR |
GPGGMFRGGRGGDRGGFRGGRGMDRGGFGGGRRGGPGGPP.PLMEQMGGRRGGRGGPGKMDKGEHRQ.RR | |
Retrocopy | GPGGMFRGGRGGDRGGFRGGRGMDRGGFGGGRRGGPGGPPEPLMEQMGGRRGGRGGPGKMDKGEHRQGRR |
Parental | DRPY |
D.PY | |
Retrocopy | DPPY |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012049_cerebellum | 0 .08 RPM | 77 .74 RPM |
SRP017611_brain | 0 .00 RPM | 36 .04 RPM |
SRP017611_kidney | 0 .00 RPM | 45 .24 RPM |
SRP017611_liver | 0 .00 RPM | 33 .94 RPM |