RetrogeneDB ID: | retro_cfam_136 | ||
Retrocopylocation | Organism: | Dog (Canis familiaris) | |
Coordinates: | 2:1851976..1852570(-) | ||
Located in intron of: | ENSCAFG00000003705 | ||
Retrocopyinformation | Ensembl ID: | ENSCAFG00000029571 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSCAFG00000004823 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 98.99 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | THQSKIKYDWYQTESQVIITLMIKNVQKNNVNVEFSEKELSALVKLPSGEDYNLKLRLLHPIIPEQSTFK |
THQSKIKYDWYQTESQVIITLMIKNVQKNNVNVEFSEKELSALVKLPSGEDYNLKLRLLHPIIPEQSTFK | |
Retrocopy | THQSKIKYDWYQTESQVIITLMIKNVQKNNVNVEFSEKELSALVKLPSGEDYNLKLRLLHPIIPEQSTFK |
Parental | VLSTKIEIKMKKTEAVRWEKLEGQGDVPKPKQFIADVKNLYPSSSHYTRNWDKLVGEIKEEEKNEKLEGD |
VLSTKIEIKMKKTEAVRWEKLEGQGDVPKPKQFIADVKNLYPSSSHYTRNWDKLVGEIKEEEKNEKLE.D | |
Retrocopy | VLSTKIEIKMKKTEAVRWEKLEGQGDVPKPKQFIADVKNLYPSSSHYTRNWDKLVGEIKEEEKNEKLEVD |
Parental | AALNKLFQQIYSDGSDEVKRAMNKSFMESGGTVLSTNWSDVGKRKVEINPPDDMEWKK |
AALNKLFQQIYSDGSDEVKRAMNKSFMESGGTVLSTNWSDVGKRKVEINPPDDM.WKK | |
Retrocopy | AALNKLFQQIYSDGSDEVKRAMNKSFMESGGTVLSTNWSDVGKRKVEINPPDDMDWKK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012049_cerebellum | 0 .59 RPM | 6 .68 RPM |
SRP017611_brain | 1 .27 RPM | 4 .45 RPM |
SRP017611_kidney | 1 .12 RPM | 9 .51 RPM |
SRP017611_liver | 0 .22 RPM | 2 .61 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000008606 | 2 retrocopies | |
Canis familiaris | ENSCAFG00000004823 | 1 retrocopy |
retro_cfam_136 ,
|
Callithrix jacchus | ENSCJAG00000003604 | 1 retrocopy | |
Cavia porcellus | ENSCPOG00000003374 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000002991 | 1 retrocopy | |
Homo sapiens | ENSG00000165416 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000006797 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000015700 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000008220 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000005906 | 1 retrocopy |