RetrogeneDB ID: | retro_ggor_1840 | ||
Retrocopylocation | Organism: | Gorilla (Gorilla gorilla) | |
Coordinates: | 3:33650885..33651858(+) | ||
Located in intron of: | ENSGGOG00000000171 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SUGT1 | ||
Ensembl ID: | ENSGGOG00000006797 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 85.24 % |
Parental protein coverage: | 98.2 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 4 |
Parental | VASWGRTATSQRFFQSFSDALIDEDPQAALEELTKALEQKPDDAQYYCQRAYCHILLGNYCVAVADAKKS |
VA.....ATSQRFFQSF.D.LIDEDPQAALEELTKALEQKP.DA.Y.CQRAYCHILLGNYCVAVAD.KKS | |
Retrocopy | VAAAAGPATSQRFFQSFLDTLIDEDPQAALEELTKALEQKPNDA*Y*CQRAYCHILLGNYCVAVADGKKS |
Parental | LELNPNNSTAMLRKGICEYHGKNYAAALE-TFTEGQKLDSADANFSVWIKRCQEAQNGSESEVWTHQSKI |
LE.NPNNST.MLRKG.CEY..KNY.AALE..F....K..SADANFSVWIKRCQEAQNG.ESEVWTHQ.KI | |
Retrocopy | LEFNPNNSTTMLRKGTCEYYEKNYVAALE<NFYRRTKI-SADANFSVWIKRCQEAQNGPESEVWTHQ*KI |
Parental | KYDWYQTESQVVITLMIKNVQ-KNDVNVEFSEKELSALVKLPS-GEDYNLKLELLHPIIPEQSTFKVLST |
.YDWYQTESQVVITLMIKNVQ.KNDVNVEFSEKELSALVKLP..GEDYNLKLEL.HPIIPEQ.TFKV.ST | |
Retrocopy | RYDWYQTESQVVITLMIKNVQ<KNDVNVEFSEKELSALVKLPL<GEDYNLKLEL-HPIIPEQRTFKVVST |
Parental | KIEIKLKKPEAVRWEKLEGQGDVPTPKQFVADVKNLYPSSSPHTRNWDKLVGEIREEEKNEKLEGDAALN |
KIEIKLKKPEAVRWEKLEGQGDVPTPKQF.A.VK.L.PSSSP.TRNWDKLVG.I.EEE.NEKLEGDAALN | |
Retrocopy | KIEIKLKKPEAVRWEKLEGQGDVPTPKQFIAGVKHLHPSSSPYTRNWDKLVGKIKEEENNEKLEGDAALN |
Parental | RLFQQIYSDGSDEVKRAMNKSFM-ESGGTVLSTNWSDVGKRKVEINPPDDME |
RLFQQIYSDGSDEVK.AMN..FM.ES.GTVLST.WSDVGKRKVEIN.PDDME | |
Retrocopy | RLFQQIYSDGSDEVKCAMNRCFM>ESDGTVLSTSWSDVGKRKVEIN-PDDME |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .05 RPM | 13 .04 RPM |
SRP007412_cerebellum | 0 .28 RPM | 9 .10 RPM |
SRP007412_heart | 0 .09 RPM | 5 .47 RPM |
SRP007412_kidney | 0 .29 RPM | 21 .59 RPM |
SRP007412_liver | 0 .16 RPM | 14 .56 RPM |
SRP007412_testis | 0 .41 RPM | 36 .36 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_2628 |
Pan troglodytes | retro_ptro_1773 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000008606 | 2 retrocopies | |
Canis familiaris | ENSCAFG00000004823 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000003604 | 1 retrocopy | |
Cavia porcellus | ENSCPOG00000003374 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000002991 | 1 retrocopy | |
Homo sapiens | ENSG00000165416 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000006797 | 1 retrocopy |
retro_ggor_1840 ,
|
Nomascus leucogenys | ENSNLEG00000015700 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000008220 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000005906 | 1 retrocopy |