RetrogeneDB ID: | retro_dnov_2621 | ||
Retrocopylocation | Organism: | Armadillo (Dasypus novemcinctus) | |
Coordinates: | scaffold_91419:4275..4824(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SUGT1 | ||
Ensembl ID: | ENSDNOG00000002991 | ||
Aliases: | None | ||
Description: | SGT1, suppressor of G2 allele of SKP1 (S. cerevisiae) [Source:HGNC Symbol;Acc:16987] |
Percent Identity: | 74.74 % |
Parental protein coverage: | 51.23 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 3 |
Parental | TESQVIITLM-IKNVQKNDVNVEFSEKEFSALVKLPSGEDYNLKLRLLHPIIPEQSTFKVLSTKIEIKMK |
TE.Q.I.TL.....V.K....VE.SEK.FS.LVK..S.EDY.L.LRLLHP.IPEQ.TFKVLS.KIEIKM. | |
Retrocopy | TEPQAILTLS<LEDVPKSKAHVECSEKRFSSLVKPLSREDYSLRLRLLHPMIPEQNTFKVLSRKIEIKME |
Parental | KP-EAVRWEKLEGEGDTSKPKQFIA-DVKNLYPSSSHYTRNWDKLVCEIKEEEKNEKLEGDAALNKLFQQ |
K..EAV.WEKLEG.GD..KPKQFIA.DVKNLYP.S.HYT..WDKLV..IKE..KNEKLEGDA.LN.LFQQ | |
Retrocopy | KQ<EAVTWEKLEG-GDIPKPKQFIA<DVKNLYPLSPHYTKKWDKLVSKIKE--KNEKLEGDAELNRLFQQ |
Parental | IYSDGSDEVKRAMNKSFMESGGTVLSTNWSDVGKRKVEINPPDDMEWKKY |
IYSD.SDEVKR..NKSFMES.GTVLSTNWSDVGKR.VE.NPPDDMEWKKY | |
Retrocopy | IYSDVSDEVKRVLNKSFMESSGTVLSTNWSDVGKRNVEVNPPDDMEWKKY |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012922_ascending_colon | 0 .78 RPM | 20 .61 RPM |
SRP012922_cerebellum | 0 .14 RPM | 19 .11 RPM |
SRP012922_heart | 0 .00 RPM | 20 .19 RPM |
SRP012922_kidney | 0 .00 RPM | 23 .82 RPM |
SRP012922_liver | 0 .00 RPM | 12 .23 RPM |
SRP012922_lung | 0 .00 RPM | 25 .20 RPM |
SRP012922_quadricep_muscle | 0 .00 RPM | 17 .14 RPM |
SRP012922_spleen | 0 .00 RPM | 22 .43 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000008606 | 2 retrocopies | |
Canis familiaris | ENSCAFG00000004823 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000003604 | 1 retrocopy | |
Cavia porcellus | ENSCPOG00000003374 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000002991 | 1 retrocopy |
retro_dnov_2621 ,
|
Homo sapiens | ENSG00000165416 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000006797 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000015700 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000008220 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000005906 | 1 retrocopy |