>retro_cfam_1496
ATGTCTTACCCCGCTGATGATTACGAGTCCGAGGCTGCTTATGATCCCTATGCTTACCCAGGCGACTATGATATGCACAC
AGGAGACCCAAAGCAGAATCTGGCTTACGAACGTCAGTATGAACAGCAGACCTATCAGGTGATCCTCGAAGTGATCAAAA
ACTTCATCCAGTATTTTCACAAAACCGTCTCGGATTTGATTGACCAGAAGGTGTATGAGCTGCAGGCTAGTCGTGTATCC
AGCGATGTCATTGATCAGAAAGTATATGAGATCCAGGACATCTATGAGAACAGCTGGACCAAGTTGACTGAAAGGTTCTT
CAAGAATACACCTTGGCCTGAGGCTGAAGCCATAGCTCCACAGGTTGGCAACGATGCCGTCTTCCTGATTTTGTACAAAG
AATTATACTACAGGCACATATATGCCAAAGTCAGTGGGGGCCCCTCCTTGGAGCAGAGGTTTGAATCCTACTACAACTAC
TGCAATCTCTTCAACTACATTCTTAATGCTGATGGTCCTGCTCCCCTTGAACTACCTAACCAGTGGCTTTGGGATATCAT
TGATGAGTTCATCTATCAGTTTCAGTCATTCAGCCAGTACCGCTGTAAGACTGCCAAGAAGTCAGAGGAAGAGATTGACT
TCCTTCGCTCCAATCCCAAAATCTGGAATGTTCACAGTGTCCTCAATGTCCTCCACTCCCTGGTCGACAAATCCAACATT
AACCGGCAATTGGAGGTGTACACAAATGGTGGTGACCCCGAGAGTGTGGCTGGTGAGTATGGACGGCACTCCCTTTACAA
GATGCTTGGGTATTTCAGCCTGGTGAGGCTTCTGCGTCTGCACTCCCTTTTAGGGGATTACTACCAGGCCATCAAGGTGC
TGGAGAATATTGAACTGAATAAGAAGAGTATGTATTCTCGTGTGCCTGAGTGCCAGGTCACCACATACTACTATGTCGGT
TTTGCATGTTTGATGATGCGTCGCTACCAGGCTGCCATCCGGGTATTTGCCAATATCCTCCTCTACATCCAAAGGACCAA
GAGCATGTTCCAAAGGACTACATACAAGTATGAGATGATTAACAAGCAAAATGAGCAGATGCACGCGCTGCTGGCCATCG
CCCTCACCATGTACCCCATGCGAATCGATGAGAGCATTCACCTGCAGCTGCGGGAAAAATACGGGGATAAGATGCTACAC
ATGCAGAAGGGTGACCCACAGGTCTATGAGGAACTTTTCAGTTACTCGTGCCCCAAATTCCTGTCACCTGTGGTGCCCAA
CTATGATAATGTGCACCCCAACTACCACAAGGAGCCCTTCCTGCAGCAGCTGAAGGTGTTTTCTGATGAAGTGCAGCAGC
AGGCCCAGCTCTCCACCATCCGTAGCTTCCTCAAGCTGTACACTACCATGCCTGTGGCCAAGCTGGCCGGCTTCCTGGAC
CTCACAGAGCAGGAGTTCAGGATCCAGCTCCTTGTCTTCAAGCATAAGATGAAGAACCTAGTGTGGACCAGTGGCATCTC
TGCCCTTGACGGTGAATTTCAGTCGGCATCCGAAGTTGACTTCTACATTGATAAGGACATGATCCACATTGCAGACACCA
AGGTCGCCAGGCGCTATGGGGATTTCTTCATCCGGCAGATTCACAAATTTGAGGAGTTCAATCGAACTCTGAAGAAGATG
GGACAGAGACCC
ORF - retro_cfam_1496 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
98.58 % |
Parental protein coverage: |
100. % |
Number of stop codons detected: |
0 |
Number of frameshifts detected |
0 |
Retrocopy - Parental Gene Alignment:
Parental | MSYPADDYESEAAYDPYAYPGDYDMHTGDPKQDLAYERQYEQQTYQVIPEVIKNFIQYFHKTVSDLIDQK |
| MSYPADDYESEAAYDPYAYPGDYDMHTGDPKQ.LAYERQYEQQTYQVI.EVIKNFIQYFHKTVSDLIDQK |
Retrocopy | MSYPADDYESEAAYDPYAYPGDYDMHTGDPKQNLAYERQYEQQTYQVILEVIKNFIQYFHKTVSDLIDQK |
|
Parental | VYELQASRVSSDVIDQKVYEIQDIYENSWTKLTERFFKNTPWPEAEAIAPQVGNDAVFLILYKELYYRHI |
| VYELQASRVSSDVIDQKVYEIQDIYENSWTKLTERFFKNTPWPEAEAIAPQVGNDAVFLILYKELYYRHI |
Retrocopy | VYELQASRVSSDVIDQKVYEIQDIYENSWTKLTERFFKNTPWPEAEAIAPQVGNDAVFLILYKELYYRHI |
|
Parental | YAKVSGGPSLEQRFESYYNYCNLFNYILNADGPAPLELPNQWLWDIIDEFIYQFQSFSQYRCKTAKKSEE |
| YAKVSGGPSLEQRFESYYNYCNLFNYILNADGPAPLELPNQWLWDIIDEFIYQFQSFSQYRCKTAKKSEE |
Retrocopy | YAKVSGGPSLEQRFESYYNYCNLFNYILNADGPAPLELPNQWLWDIIDEFIYQFQSFSQYRCKTAKKSEE |
|
Parental | EIDFLRSNPKIWNVHSVLNVLHSLVDKSNINRQLEVYTSGGDPESVAGEYGRHSLYKMLGYFSLVGLLRL |
| EIDFLRSNPKIWNVHSVLNVLHSLVDKSNINRQLEVYT.GGDPESVAGEYGRHSLYKMLGYFSLV.LLRL |
Retrocopy | EIDFLRSNPKIWNVHSVLNVLHSLVDKSNINRQLEVYTNGGDPESVAGEYGRHSLYKMLGYFSLVRLLRL |
|
Parental | HSLLGDYYQAIKVLENIELNKKSMYSRVPECQVTTYYYVGFAYLMMRRYQDAIRVFANILLYIQRTKSMF |
| HSLLGDYYQAIKVLENIELNKKSMYSRVPECQVTTYYYVGFA.LMMRRYQ.AIRVFANILLYIQRTKSMF |
Retrocopy | HSLLGDYYQAIKVLENIELNKKSMYSRVPECQVTTYYYVGFACLMMRRYQAAIRVFANILLYIQRTKSMF |
|
Parental | QRTTYKYEMINKQNEQMHALLAIALTMYPMRIDESIHLQLREKYGDKMLRMQKGDPQVYEELFSYSCPKF |
| QRTTYKYEMINKQNEQMHALLAIALTMYPMRIDESIHLQLREKYGDKML.MQKGDPQVYEELFSYSCPKF |
Retrocopy | QRTTYKYEMINKQNEQMHALLAIALTMYPMRIDESIHLQLREKYGDKMLHMQKGDPQVYEELFSYSCPKF |
|
Parental | LSPVVPNYDNVHPNYHKEPFLQQLKVFSDEVQQQAQLSTIRSFLKLYTTMPVAKLAGFLDLTEQEFRIQL |
| LSPVVPNYDNVHPNYHKEPFLQQLKVFSDEVQQQAQLSTIRSFLKLYTTMPVAKLAGFLDLTEQEFRIQL |
Retrocopy | LSPVVPNYDNVHPNYHKEPFLQQLKVFSDEVQQQAQLSTIRSFLKLYTTMPVAKLAGFLDLTEQEFRIQL |
|
Parental | LVFKHKMKNLVWTSGISALDGEFQSASEVDFYIDKDMIHIADTKVARRYGDFFIRQIHKFEELNRTLKKM |
| LVFKHKMKNLVWTSGISALDGEFQSASEVDFYIDKDMIHIADTKVARRYGDFFIRQIHKFEE.NRTLKKM |
Retrocopy | LVFKHKMKNLVWTSGISALDGEFQSASEVDFYIDKDMIHIADTKVARRYGDFFIRQIHKFEEFNRTLKKM |
|
Parental | GQRP |
| GQRP |
Retrocopy | GQRP |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
Library |
Retrocopy expression |
Parental gene expression |
SRP012049_cerebellum |
0 .04 RPM |
25 .41 RPM |
SRP017611_brain |
0 .08 RPM |
10 .00 RPM |
SRP017611_kidney |
0 .33 RPM |
105 .92 RPM |
SRP017611_liver |
0 .29 RPM |
24 .22 RPM |
Canis familiaris was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_cfam_1496 retrocopy.
Canis familiaris was not studied using FANTOM5 data.
retro_cfam_1496 was not experimentally validated.
Retrocopy orthology:
Retrocopy retro_cfam_1496 has 0 orthologous retrocopies within eutheria group .
Parental genes homology:
Parental genes homology involve
5 parental genes, and
10 retrocopies.