>retro_cfam_315
ATGTCTTACCCCGCTGATGATTACGAGTCCGAGGCTGCTTATGATCCCTATGCTTACCCAGGCGACTACGATATGCACAC
AGGAGACCCAAAGCAGGATCTGGCTTACGAACGTCAGTATGAACAGCAGACCTATCAGGTGATCCCTGAAGTGATCAAAA
ACTTCATCCAGTATTTTCACAAAACCGTCTCGGATTTGATTGACCAGAAGGTGTATGAGCTGCAGGCTAGTCGTGTATCC
AGCGATGTCATTGATCAGAAAGTATATGAGATCCAGGACATCTATGAGAACAGCTGGACCAAGTTGACTGAAAGGTTCTT
CAAGAATACACCTTGGCCTGAGGCTGAAGCCATAGCTCCACAGGTTGGCAACGATGCCGTCTTCCTGATTTTGTACAAAG
AATTCTACTACAGGCACATATATGCCAAAGTCAGTGGGGGCCCCTCCTTGGAGCAGAGGTTTGAATCCTACTACAACTAC
TGCAATCTCTTCAACTACATTCTTAATGCTGATGGTCCTGCTCCCCTTGAACTACCTAACCAGTGGCTTTGGGATATCAT
TGATGAGTTCATCTATCAGTTTCAGTCATTTAGCCAGTACTGCTGTAAGACTGCCAAGAAGTCAGAGGAAGAGATTGACT
TCCTTTGCTCCAATCCCAAAATCTGGAATGTTCAGTGTCCTCAATGTCCTCCACTCCCTGGTCGAAAAATCCAACATTAA
CCGGCAATTGGAGGTGTACACAAGTGGTGGTGACCCCAAGAGTGTGGCTGGCGAGTATGGACGGCACTCCCTTTACAAGA
TGCTTGGGTATTTCAGCCTGGTGGGGCTTCTGCGTCTGCACTCCCTTTTAGGGGATTACTACCAGGCCATCAAGGTGCTG
GAGAATATTGAACTGAATAAGAAGAGTATGTATTCTCGTGTGCCTGAGTGTCAGGTCACCACATACTACTATGTCGGTTT
TGCATATTTGATGATGCATCGCTACCAGGATGCCATCCGGGTATTTGCCAATATCCTCCTCTACATCCAAAGGACCAAGA
GCATGTTCCAAAGGACTACATACAAGTATGAGATGATTAACAAGCAAAATGAGCAGATGCTCGCGCTGCTGGCCATCGCC
CTCACCATGTACCCCATGCGAATCGATGAGATCATTCACCTGCAGCTGCGGAAGAAATACGGGGATAAGATGCTATGCAT
GCAGAAGGGTGACCCACAGGTCTATGAGGAACTTTTCAGTTACTCGTGCCCCAAATTCCTGTCACCTGTGGTGCCCAACT
ATGATAATGTGCACCCCAACTACCACAAGGAGCCCTTCTTGCAGCAGCTGAAGGTGTTTTCTGATGAAGTGCAGCATCAG
GCCCAGCTCTCCACCATCCGTAGCTTCCTCAAGCTGTACACTACCATGCCTGTGGCCAAGCTGGCCGGCTTCCTGGACCT
CACAGAGCAGGAGTTCAGGATCCAGCTCCTTGTCTTCAAGCATAAGATGAAGAACCTAGTGTGGACCAGTGGCATCTCTG
CCCTTGACGGTGAATTTCAGTCGGCATCCGAAGTTGACTTCTACATTGATAAGGACATGATCCACATTGCAGACACCAAG
GTCGCCAGGCGCTATGGGGATTTCTTCATCCGGCAGATTCACAAATTTGAGGAGCTCAATCGAACTCTGAAGAAGATGGG
ACAGAGACCC
ORF - retro_cfam_315 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
96.99 % |
Parental protein coverage: |
100. % |
Number of stop codons detected: |
0 |
Number of frameshifts detected |
1 |
Retrocopy - Parental Gene Alignment:
Parental | MSYPADDYESEAAYDPYAYPGDYDMHTGDPKQDLAYERQYEQQTYQVIPEVIKNFIQYFHKTVSDLIDQK |
| MSYPADDYESEAAYDPYAYPGDYDMHTGDPKQDLAYERQYEQQTYQVIPEVIKNFIQYFHKTVSDLIDQK |
Retrocopy | MSYPADDYESEAAYDPYAYPGDYDMHTGDPKQDLAYERQYEQQTYQVIPEVIKNFIQYFHKTVSDLIDQK |
|
Parental | VYELQASRVSSDVIDQKVYEIQDIYENSWTKLTERFFKNTPWPEAEAIAPQVGNDAVFLILYKELYYRHI |
| VYELQASRVSSDVIDQKVYEIQDIYENSWTKLTERFFKNTPWPEAEAIAPQVGNDAVFLILYKE.YYRHI |
Retrocopy | VYELQASRVSSDVIDQKVYEIQDIYENSWTKLTERFFKNTPWPEAEAIAPQVGNDAVFLILYKEFYYRHI |
|
Parental | YAKVSGGPSLEQRFESYYNYCNLFNYILNADGPAPLELPNQWLWDIIDEFIYQFQSFSQYRCKTAKKSEE |
| YAKVSGGPSLEQRFESYYNYCNLFNYILNADGPAPLELPNQWLWDIIDEFIYQFQSFSQY.CKTAKKSEE |
Retrocopy | YAKVSGGPSLEQRFESYYNYCNLFNYILNADGPAPLELPNQWLWDIIDEFIYQFQSFSQYCCKTAKKSEE |
|
Parental | EIDFLRSN-PKIWNVHSVLNVLHSLVDKSNINRQLEVYTSGGDPESVAGEYGRHSLYKMLGYFSLVGLLR |
| EIDFL.SN.PK.....SVLNVLHSLV.KSNINRQLEVYTSGGDP.SVAGEYGRHSLYKMLGYFSLVGLLR |
Retrocopy | EIDFLCSN>PKS-GMFSVLNVLHSLVEKSNINRQLEVYTSGGDPKSVAGEYGRHSLYKMLGYFSLVGLLR |
|
Parental | LHSLLGDYYQAIKVLENIELNKKSMYSRVPECQVTTYYYVGFAYLMMRRYQDAIRVFANILLYIQRTKSM |
| LHSLLGDYYQAIKVLENIELNKKSMYSRVPECQVTTYYYVGFAYLMM.RYQDAIRVFANILLYIQRTKSM |
Retrocopy | LHSLLGDYYQAIKVLENIELNKKSMYSRVPECQVTTYYYVGFAYLMMHRYQDAIRVFANILLYIQRTKSM |
|
Parental | FQRTTYKYEMINKQNEQMHALLAIALTMYPMRIDESIHLQLREKYGDKMLRMQKGDPQVYEELFSYSCPK |
| FQRTTYKYEMINKQNEQM.ALLAIALTMYPMRIDE.IHLQLR.KYGDKML.MQKGDPQVYEELFSYSCPK |
Retrocopy | FQRTTYKYEMINKQNEQMLALLAIALTMYPMRIDEIIHLQLRKKYGDKMLCMQKGDPQVYEELFSYSCPK |
|
Parental | FLSPVVPNYDNVHPNYHKEPFLQQLKVFSDEVQQQAQLSTIRSFLKLYTTMPVAKLAGFLDLTEQEFRIQ |
| FLSPVVPNYDNVHPNYHKEPFLQQLKVFSDEVQ.QAQLSTIRSFLKLYTTMPVAKLAGFLDLTEQEFRIQ |
Retrocopy | FLSPVVPNYDNVHPNYHKEPFLQQLKVFSDEVQHQAQLSTIRSFLKLYTTMPVAKLAGFLDLTEQEFRIQ |
|
Parental | LLVFKHKMKNLVWTSGISALDGEFQSASEVDFYIDKDMIHIADTKVARRYGDFFIRQIHKFEELNRTLKK |
| LLVFKHKMKNLVWTSGISALDGEFQSASEVDFYIDKDMIHIADTKVARRYGDFFIRQIHKFEELNRTLKK |
Retrocopy | LLVFKHKMKNLVWTSGISALDGEFQSASEVDFYIDKDMIHIADTKVARRYGDFFIRQIHKFEELNRTLKK |
|
Parental | MGQRP |
| MGQRP |
Retrocopy | MGQRP |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
Library |
Retrocopy expression |
Parental gene expression |
SRP012049_cerebellum |
0 .04 RPM |
25 .41 RPM |
SRP017611_brain |
0 .00 RPM |
10 .00 RPM |
SRP017611_kidney |
0 .13 RPM |
105 .92 RPM |
SRP017611_liver |
0 .07 RPM |
24 .22 RPM |
Canis familiaris was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_cfam_315 retrocopy.
Canis familiaris was not studied using FANTOM5 data.
retro_cfam_315 was not experimentally validated.
Retrocopy orthology:
Retrocopy retro_cfam_315 has 0 orthologous retrocopies within eutheria group .
Parental genes homology:
Parental genes homology involve
5 parental genes, and
10 retrocopies.