RetrogeneDB ID: | retro_cfam_152 | ||
Retrocopylocation | Organism: | Dog (Canis familiaris) | |
Coordinates: | X:81314454..81314946(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSCAFG00000017990 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | NCBP2 | ||
Ensembl ID: | ENSCAFG00000013100 | ||
Aliases: | None | ||
Description: | nuclear cap binding protein subunit 2, 20kDa [Source:HGNC Symbol;Acc:7659] |
Percent Identity: | 70.47 % |
Parental protein coverage: | 95.51 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | LKALRSDSYVELSQYRDQHFRGDNEEQEKLLKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDK |
L..L..DS..ELS.Y.DQ.F.GDN.EQEKLLK.S.TLYVGNLSFYTTEEQIYELFS..GD.K...MGLDK | |
Retrocopy | LRILCGDSSLELSEYQDQQFGGDNDEQEKLLKDSSTLYVGNLSFYTTEEQIYELFSRCGDVKNVFMGLDK |
Parental | MKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWDAGFKEGRQYGRGRSGGQVRDEYRQDYDAG |
.KKTACGFCF.EY..R.DAENAM...NGT.LDD..I.TDWD.GF.EGRQY...RSGGQ.R.E.R.D.D.G | |
Retrocopy | IKKTACGFCFIEYHNRFDAENAMLFLNGTCLDDHTICTDWDLGFREGRQYSHHRSGGQIRNEFREDSDIG |
Parental | RGGYGKLAQ |
RGG.GK.AQ | |
Retrocopy | RGGFGKQAQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012049_cerebellum | 0 .00 RPM | 50 .52 RPM |
SRP017611_brain | 0 .00 RPM | 27 .95 RPM |
SRP017611_kidney | 0 .07 RPM | 77 .13 RPM |
SRP017611_liver | 0 .00 RPM | 11 .31 RPM |