RetrogeneDB ID: | retro_cfam_1756 | ||
Retrocopylocation | Organism: | Dog (Canis familiaris) | |
Coordinates: | 5:22405721..22406267(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSCAFG00000014235 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RAB13 | ||
Ensembl ID: | ENSCAFG00000017389 | ||
Aliases: | None | ||
Description: | RAB13, member RAS oncogene family [Source:HGNC Symbol;Acc:9762] |
Percent Identity: | 93.41 % |
Parental protein coverage: | 89.66 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MAKAYDHLFKLLLIGDSGVGKTCLIIRFAEDSFNNTYISTIGIDFKIRTVDVEGKKIKLQVWDTAGQERF |
MAKAYDHLFKLLLIGDSG..KTCLII.FAEDSFNNTYISTIGIDFKI.TVD...KKIKLQ.WDTAGQE.F | |
Retrocopy | MAKAYDHLFKLLLIGDSGMRKTCLIICFAEDSFNNTYISTIGIDFKICTVDIGRKKIKLQIWDTAGQEGF |
Parental | KTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIKENASAGVERLLLGNKCDMEAKRKVQKEQAIKLA |
KTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIKENASAGVERLLLGNKCDMEAKRKVQKEQ.IKLA | |
Retrocopy | KTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIKENASAGVERLLLGNKCDMEAKRKVQKEQVIKLA |
Parental | REHGIRFFETSAKSSTNVDEAFSSLARDILLKSGGRRSGNSH |
REHGIRFFETSAKSSTNVDEAFSSLA.DILLKSGG.RSGNSH | |
Retrocopy | REHGIRFFETSAKSSTNVDEAFSSLAWDILLKSGGQRSGNSH |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012049_cerebellum | 0 .08 RPM | 9 .07 RPM |
SRP017611_brain | 0 .00 RPM | 8 .02 RPM |
SRP017611_kidney | 0 .00 RPM | 14 .59 RPM |
SRP017611_liver | 0 .00 RPM | 6 .02 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000017389 | 1 retrocopy |
retro_cfam_1756 ,
|
Homo sapiens | ENSG00000143545 | 1 retrocopy | |
Loxodonta africana | ENSLAFG00000032079 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000017586 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000016969 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000001370 | 1 retrocopy |