RetrogeneDB ID: | retro_lafr_45 | ||
Retrocopylocation | Organism: | Elephant (Loxodonta africana) | |
Coordinates: | scaffold_40:12892183..12892795(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSLAFG00000025695 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RAB13 | ||
Ensembl ID: | ENSLAFG00000032079 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 90.36 % |
Parental protein coverage: | 84.69 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | TTPGIDFKIRTVDIEGRRSNCKSDKDTAGQERFKTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIK |
.T.GI.FKIRTVDIEG.........DTAGQERFKTITTAYYRGAMGIILVYDITDEKSFENIQN.MKSIK | |
Retrocopy | STIGIAFKIRTVDIEGKKIKLQI-WDTAGQERFKTITTAYYRGAMGIILVYDITDEKSFENIQNPMKSIK |
Parental | ENASAGVERLLLGNKCDMEAKRKVQKEQANKLAREHGIRFFETSAKSSVNVDEAFSSLARDILFKSGGRR |
ENASAGVERLLLGNKCDME.KRKVQKEQA.KLAREHGIRFFETSAKSSVNVDEAFSSLARDIL.KSGGRR | |
Retrocopy | ENASAGVERLLLGNKCDMEGKRKVQKEQADKLAREHGIRFFETSAKSSVNVDEAFSSLARDILLKSGGRR |
Parental | SGNSNKPSSTDLKTCDRKNTNKCSLG |
SGNSNKPSSTDLKTCDRKNTNKCSLG | |
Retrocopy | SGNSNKPSSTDLKTCDRKNTNKCSLG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000017389 | 1 retrocopy | |
Homo sapiens | ENSG00000143545 | 1 retrocopy | |
Loxodonta africana | ENSLAFG00000032079 | 1 retrocopy |
retro_lafr_45 ,
|
Macaca mulatta | ENSMMUG00000017586 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000016969 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000001370 | 1 retrocopy |