RetrogeneDB ID: | retro_mmul_324 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 15:73668574..73668943(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSMMUG00000031740 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MMU.4654 | ||
Ensembl ID: | ENSMMUG00000017586 | ||
Aliases: | None | ||
Description: | ras-related protein Rab-13 [Source:RefSeq peptide;Acc:NP_001248220] |
Percent Identity: | 91.8 % |
Parental protein coverage: | 60.1 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MGIILVYDITDEKSFENIQNWMKSIKENASAGVERLLLGNKCDMEAKRKVQKEQADKLAREHGIRFFETS |
MGIILVYDI.DEKSFENIQNWMKSIKEN..AGVE.LLLGNKCD.EAKRKVQKEQADKLA.E.GIRFFETS | |
Retrocopy | MGIILVYDIMDEKSFENIQNWMKSIKENGLAGVEHLLLGNKCDVEAKRKVQKEQADKLAPEQGIRFFETS |
Parental | AKSSMNVDEAFSSLARDILLKSGGRRSGNGNKPPSTDLKTCDKKNTNKCSLG |
AKSSMNVDEAFSSLA.DILLKSG.RRSGNGNKPPSTDLKTCDKKNT.KCSLG | |
Retrocopy | AKSSMNVDEAFSSLAQDILLKSGDRRSGNGNKPPSTDLKTCDKKNTSKCSLG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 10 .20 RPM |
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 10 .47 RPM |
SRP007412_cerebellum | 0 .00 RPM | 13 .69 RPM |
SRP007412_heart | 0 .06 RPM | 43 .28 RPM |
SRP007412_kidney | 0 .00 RPM | 45 .19 RPM |
SRP007412_liver | 0 .00 RPM | 25 .85 RPM |
SRP007412_testis | 0 .15 RPM | 31 .51 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000017389 | 1 retrocopy | |
Homo sapiens | ENSG00000143545 | 1 retrocopy | |
Loxodonta africana | ENSLAFG00000032079 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000017586 | 1 retrocopy |
retro_mmul_324 ,
|
Macaca mulatta | ENSMMUG00000021721 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000016969 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000001370 | 1 retrocopy |