RetrogeneDB ID: | retro_cfam_2054 | ||
Retrocopylocation | Organism: | Dog (Canis familiaris) | |
Coordinates: | X:31930478..31930848(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MOB1A | ||
Ensembl ID: | ENSCAFG00000008735 | ||
Aliases: | None | ||
Description: | MOB kinase activator 1A [Source:HGNC Symbol;Acc:16015] |
Percent Identity: | 63.28 % |
Parental protein coverage: | 57.41 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 4 |
Parental | TITEFCTEASCPVMSAGPRYEYHWADGTNIKK-PIKCSAPKYIDYLMTWVQDQL-DDETLFPS-KIGVPF |
T..E.CTEASC.V..AGPR.EY.W.D..N.K..P.K.S.PKYI..LMT.VQD.L...ETLFPS.KIGVPF | |
Retrocopy | TRSELCTEASCLVTTAGPRSEYRWEDAINFKA<PVKGSTPKYINCLMT*VQD*L<GHETLFPS>KIGVPF |
Parental | PKNFMSVAKTILKRLFRVYAHIYHQHFDSVMQLQEEAHLNTSFKHFI-FFVQEFNLID |
..NF.SV..TILK..F.VYAHI..QHFDSVMQ.QE.A..NTSFK.FI..F.....LID | |
Retrocopy | SQNFLSVVRTILKHSFKVYAHIS*QHFDSVMQEQEKACHNTSFKYFI<LF*SSISLID |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012049_cerebellum | 0 .00 RPM | 12 .77 RPM |
SRP017611_brain | 0 .00 RPM | 7 .94 RPM |
SRP017611_kidney | 0 .00 RPM | 19 .08 RPM |
SRP017611_liver | 0 .00 RPM | 9 .35 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000017359 | 1 retrocopy | |
Canis familiaris | ENSCAFG00000008735 | 1 retrocopy |
retro_cfam_2054 ,
|
Dasypus novemcinctus | ENSDNOG00000012838 | 3 retrocopies | |
Echinops telfairi | ENSETEG00000018245 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000015208 | 2 retrocopies | |
Mustela putorius furo | ENSMPUG00000007824 | 2 retrocopies | |
Otolemur garnettii | ENSOGAG00000003504 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000042657 | 2 retrocopies |