RetrogeneDB ID: | retro_dnov_2226 | ||
Retrocopylocation | Organism: | Armadillo (Dasypus novemcinctus) | |
Coordinates: | scaffold_56942:41005..41566(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MOB1A | ||
Ensembl ID: | ENSDNOG00000012838 | ||
Aliases: | None | ||
Description: | MOB kinase activator 1A [Source:HGNC Symbol;Acc:16015] |
Percent Identity: | 87.17 % |
Parental protein coverage: | 88.63 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | KHAEATLGSGNLRQAVMLPEGEDLNEWIAVNTVDFFNQINMLYGTITEFCTEASCPVMSAGPRYEYHWAD |
KHAEATLGSGNLRQAVMLPEGEDLNEWIAVNTV.FFNQINMLY.TITEFCTEASC.V.SAGP.YEYHWAD | |
Retrocopy | KHAEATLGSGNLRQAVMLPEGEDLNEWIAVNTVHFFNQINMLYATITEFCTEASCSVVSAGP*YEYHWAD |
Parental | GTNIKKPIKCSAPKYIDYLMTWVQDQLDDETLFPSKIXXXXXXNFMSVAKTILKRLFRVYAHIYHQHFDS |
GTNIKKPIKCSAPKY.DYLMTWVQDQLDDETLFP.KI......N.MSVAK..LK.LFRVY.H.YHQHFDS | |
Retrocopy | GTNIKKPIKCSAPKYTDYLMTWVQDQLDDETLFPAKIGVPFPKNLMSVAKPTLKHLFRVYVHVYHQHFDS |
Parental | VMQLQEEAHLNTSFKHFIFFVQEFNLIDRRELAPLQELIEKLGSKDR |
VMQLQEEAHLNTSFKHFIFF.QEFNL.DRREL.PLQELIEK.GS.DR | |
Retrocopy | VMQLQEEAHLNTSFKHFIFFAQEFNLTDRRELTPLQELIEKPGSEDR |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012922_ascending_colon | 0 .78 RPM | 18 .67 RPM |
SRP012922_cerebellum | 0 .14 RPM | 2 .89 RPM |
SRP012922_heart | 0 .23 RPM | 1 .62 RPM |
SRP012922_kidney | 0 .00 RPM | 1 .37 RPM |
SRP012922_liver | 0 .15 RPM | 3 .56 RPM |
SRP012922_lung | 0 .61 RPM | 16 .04 RPM |
SRP012922_quadricep_muscle | 0 .00 RPM | 2 .08 RPM |
SRP012922_spleen | 1 .26 RPM | 26 .55 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000017359 | 1 retrocopy | |
Canis familiaris | ENSCAFG00000008735 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000012838 | 3 retrocopies |
retro_dnov_1948, retro_dnov_2226 , retro_dnov_337,
|
Echinops telfairi | ENSETEG00000018245 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000015208 | 2 retrocopies | |
Mustela putorius furo | ENSMPUG00000007824 | 2 retrocopies | |
Otolemur garnettii | ENSOGAG00000003504 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000042657 | 2 retrocopies |