RetrogeneDB ID: | retro_dnov_1948 | ||
Retrocopylocation | Organism: | Armadillo (Dasypus novemcinctus) | |
Coordinates: | scaffold_38320:799..1172(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MOB1A | ||
Ensembl ID: | ENSDNOG00000012838 | ||
Aliases: | None | ||
Description: | MOB kinase activator 1A [Source:HGNC Symbol;Acc:16015] |
Percent Identity: | 72.44 % |
Parental protein coverage: | 59.24 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | SSRSSKTFKPKKNIPEG-SHQYELLKHAEATLGSGNLRQAVMLPEGEDLNEWIA-VNTVDFFNQINMLYG |
SS.S.KTFKP.KNIPE..SHQYE.LKH...TLGS.NL...VM.PE..D.NEWI..VN.V.FFNQ.NMLY. | |
Retrocopy | SSCSPKTFKPTKNIPED<SHQYEFLKHTDTTLGSENLSLPVMVPEADDFNEWIM<VNIVGFFNQTNMLYE |
Parental | TITEFCTEASCPVMSAGPRYEYHWADGTNIKKPIKCSAPKYIDYLMTWVQDQLDDET |
TI.EFC.E.SCPVM.AGP.YEYHWADGTNI...IK.SAPKYIDYL..WVQDQLDD.T | |
Retrocopy | TIREFCIETSCPVMPAGPQYEYHWADGTNI*RSIKSSAPKYIDYLIIWVQDQLDDKT |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012922_ascending_colon | 0 .00 RPM | 18 .67 RPM |
SRP012922_cerebellum | 0 .41 RPM | 2 .89 RPM |
SRP012922_heart | 0 .23 RPM | 1 .62 RPM |
SRP012922_kidney | 0 .00 RPM | 1 .37 RPM |
SRP012922_liver | 0 .00 RPM | 3 .56 RPM |
SRP012922_lung | 0 .00 RPM | 16 .04 RPM |
SRP012922_quadricep_muscle | 0 .00 RPM | 2 .08 RPM |
SRP012922_spleen | 0 .34 RPM | 26 .55 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000017359 | 1 retrocopy | |
Canis familiaris | ENSCAFG00000008735 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000012838 | 3 retrocopies |
retro_dnov_1948 , retro_dnov_2226, retro_dnov_337,
|
Echinops telfairi | ENSETEG00000018245 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000015208 | 2 retrocopies | |
Mustela putorius furo | ENSMPUG00000007824 | 2 retrocopies | |
Otolemur garnettii | ENSOGAG00000003504 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000042657 | 2 retrocopies |