RetrogeneDB ID: | retro_cfam_2099 | ||
Retrocopylocation | Organism: | Dog (Canis familiaris) | |
Coordinates: | X:74603909..74604148(+) | ||
Located in intron of: | ENSCAFG00000017529 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | UBE2B | ||
Ensembl ID: | ENSCAFG00000001019 | ||
Aliases: | None | ||
Description: | ubiquitin-conjugating enzyme E2B [Source:HGNC Symbol;Acc:12473] |
Percent Identity: | 88.89 % |
Parental protein coverage: | 52.63 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | MSTPARRRLMRD-FKRLQEDPPVGVSGAPSENNIMQWNAVIFGPEGTPFEDGTFKLVIEFSEEYPNKPPT |
MST.ARRRLMRD.FKR.QEDPPVGVSG.PS.NNIMQWNA.IFGP.GTPFEDGTFKLVIEFSEEYPNKP.T | |
Retrocopy | MSTLARRRLMRD<FKRFQEDPPVGVSGMPSVNNIMQWNAIIFGPKGTPFEDGTFKLVIEFSEEYPNKPLT |
Parental | VRFLSKMFHPN |
V.FLSKMFHPN | |
Retrocopy | VGFLSKMFHPN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012049_cerebellum | 0 .00 RPM | 33 .31 RPM |
SRP017611_brain | 0 .00 RPM | 22 .87 RPM |
SRP017611_kidney | 0 .00 RPM | 36 .72 RPM |
SRP017611_liver | 0 .07 RPM | 7 .40 RPM |