>retro_cfam_2106
AGGTTCTGGGCTTCTGTAGAGCCCTACTGTGCTGATATCACCAGTGAGAAAGTATGCACACTAGAGAAACTACTGAAACC
CCCAGAAGATGAGGCTGAACATTACAAGCTCCCACCCCTGAGGAAGCACTACTCCCAACGCTGGGCGCAGCAGGACCTGC
TGGAGGAACAGAAGGATGGGGCCTGGGCAGCAGCCGTGACTGACAAGAAAAAAGGCCTTATGGGGCCATTGAGCCAACTG
CACACTAAAGATCTGGATGCCCTGCTGAAGAAGTCTGAGGCCCAGCATGAGCAGCCTGAAGATGGGTGCCCCTTTGGTGC
TCTGATGCAGCGCCTCCTACAGGCCCTAGTAAAGGAAAATATCACTTCCCCTATGGAGGACTCTCCTATTCCTGACATGT
CTGGGAAGGAATCAGGAGCCGATGGGGCAAGCACCTCTCCCCACAATCAGAACAAGCCCTTCAGTGTGCCACATACCAAG
TCCCTGGAGAGCCGCATCAAGGAGGAGCTGATTGCCCAGGGCCTGCTGGAGTCTGAGGACCGCCCTGCAGAGGACTCAGA
AGATGATATCCTTGCTGAGCTGGCAAACGGCAGGCCGAGCTGAAGGCACTCAGTGCCCATAACCGTGTGGAGAAGCACGA
CATGCTGAGGCTGGGAAAAGGGAGGTAAGCCGGCAGGAGCTGAGGCAGAGGGTCCGCATGGCAGACAGCAAGGTCATGGA
CACCTTCTGGAAGATCATGGCTGCCCGGCAGAAGAAGCGGACCCCAACCAAGAAGGAGAAGGACCAGGCCTGGAAGACTC
GGAAGGAGCGTGAGAGCATCCTAAAGCTGCTGGATGGG
ORF - retro_cfam_2106 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
89.01 % |
Parental protein coverage: |
64.81 % |
Number of stop codons detected: |
0 |
Number of frameshifts detected |
2 |
Retrocopy - Parental Gene Alignment:
Parental | RFWASVEPYCADITSEEVRTLEELLKPPEDEAEHYKIPPLGKHYSQRWAQEDLLEEQKDGARAAAVADKK |
| RFWASVEPYCADITSE.V.TLE.LLKPPEDEAEHYK.PPL.KHYSQRWAQ.DLLEEQKDGA.AAAV.DKK |
Retrocopy | RFWASVEPYCADITSEKVCTLEKLLKPPEDEAEHYKLPPLRKHYSQRWAQQDLLEEQKDGAWAAAVTDKK |
|
Parental | KGLMGPLTELDTKDVDALLKKSEAQHEQPEDGCPFGALTQRLLQALVEENIISPMEDSPIPDMSGKESGA |
| KGLMGPL..L.TKD.DALLKKSEAQHEQPEDGCPFGAL.QRLLQALV.ENI.SPMEDSPIPDMSGKESGA |
Retrocopy | KGLMGPLSQLHTKDLDALLKKSEAQHEQPEDGCPFGALMQRLLQALVKENITSPMEDSPIPDMSGKESGA |
|
Parental | DGASTSPRNQNKPFSVPHTKSLESRIKEELIAQGLLESEDRPAEDSEDEVLAELR-KRQAELKALSAHNR |
| DGASTSP.NQNKPFSVPHTKSLESRIKEELIAQGLLESEDRPAEDSED..LAEL..KRQAELKALSAHNR |
Retrocopy | DGASTSPHNQNKPFSVPHTKSLESRIKEELIAQGLLESEDRPAEDSEDDILAELA<KRQAELKALSAHNR |
|
Parental | TKKHDLLRL-AKEEVSRQELRQRVRMADNEVMDAFRKIMAARQKKRTPTKKEKDQAWKTLKERESILKLL |
| ..KHD.LRL..K.EVSRQELRQRVRMAD..VMD.F.KIMAARQKKRTPTKKEKDQAWKT.KERESILKLL |
Retrocopy | VEKHDMLRL<GKREVSRQELRQRVRMADSKVMDTFWKIMAARQKKRTPTKKEKDQAWKTRKERESILKLL |
|
Parental | DG |
| DG |
Retrocopy | DG |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
Library |
Retrocopy expression |
Parental gene expression |
SRP012049_cerebellum |
0 .34 RPM |
47 .58 RPM |
SRP017611_brain |
0 .00 RPM |
47 .32 RPM |
SRP017611_kidney |
0 .07 RPM |
17 .10 RPM |
SRP017611_liver |
0 .00 RPM |
14 .65 RPM |
Canis familiaris was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_cfam_2106 retrocopy.
Canis familiaris was not studied using FANTOM5 data.
retro_cfam_2106 was not experimentally validated.
Retrocopy orthology:
Retrocopy retro_cfam_2106 has 0 orthologous retrocopies within eutheria group .
Parental genes homology:
Parental genes homology involve
5 parental genes, and
8 retrocopies.