>retro_rnor_1273
ATGAGTGAATTGAAGGACTGCCCATTGCAGTTTCATGACTTCAAGTCTGTGGACCACCTGAAGGTCTGTCCCAGGTACAC
GGCAGTGCTGGCCCACTCTGAGGATGATGGCATTGGCATCGAGTAGCTGGACACCCTGCAGCTGGAGCTTGAGACCCTGC
TATCCTCTGCAAGCAGGCGACTGCGTGTACTGGAAGCTGAAACCCAGATCCTTACTAACTGGCAGGATAAGAAAGGTGAC
AGGTGATTTTTGAAGCTTGGTCGAGACCATGAGCTTGGTGTCCCCCCAAAACATGGGAAGCACAAGAAGCAGAAACTGTA
AGGGAAGACAGGACATGGGCCAAGCCCTGGCCCAGGACGACCCAAATCCAAAAATGTTCAACCCAAGATCCAGAAATATT
AATTTACTGATGACCCAATTGATGTGCCTCGGATCCCCAAGAACGATGCTCCCAACAGGTTCTGGGCCTCTGTGGAGCCC
TATTGTGCCAACATCACTAGTGAGGAGGTACGAACACTAGAGGAGCTCCTGAAGCCCCCTAAAGATGAAGCTGAACATTA
TAAGATTCCCCCACTAGGGAAACATTACTCCCAACGCTGGTCCCAGGAGGATCTGCTAGAGGAGCAGAAAGATGTGACTC
AAGCAGCAGCTGTGGCTGACAAGAAGAAAGGCCTCATAGAACTGCTGACAGAACTGGACACAAAAGATGTGGATGCCCTG
CTGAAGAAGTCTGAGGCCCAGCATGAACAGCCAGAAGACAGGTGTCCCTTTGGTGCCCTGACACAGCGCCTGCTGCAGGT
CCTCGTGGAGGAAAATATTATTTCCTCTATGGAGGACTCTCCAATTCCTGACATGTCTGGGAAAGAATCAGGGGCTGATG
GAGCGACACCCCCCTCACCCCGCAATCAGAACAAACCTTTCATTGTGCCACATACAAAGTCCTTGGAGAGCCGCATCAAG
GAGGAACTGATTGCCCAGGGCCTACTGGAGTCCGAGGACCGGCCTGCTGAGGACTCAGAGGATGAGGTCCTCGCTGAGCT
GCGCAAACGGCAGGCTGAGCTGAAGGCGCTCAGTGCACACAACCGTACCAAGAAGCACGACCTGCTGAGGTTGGCAAAGA
AGGAGGTGAGCCTGGAGGAGCTGAGGCAGCGGGTCCGCATGGCAGACAATGAGGTCATGGATGCCTTCCGCAAGATCATG
GCTGCGTGGCAGAAGAAGCGCACCCCCACAAAGAAGGAAAAGGACTAGGCCTGGAAGACCCTGAAGGATCGGAAGAGGAT
CCTGAAGCTCCTAGATGGG
ORF - retro_rnor_1273 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
91.69 % |
Parental protein coverage: |
100. % |
Number of stop codons detected: |
5 |
Number of frameshifts detected |
0 |
Retrocopy - Parental Gene Alignment:
Parental | MSELKDCPLQFHDFKSVDHMKVCPRYTAVLARSEDDGIGIEELDTLQLELETLLSSASRRLRVLEAETQI |
| MSELKDCPLQFHDFKSVDH.KVCPRYTAVLA.SEDDGIGIE.LDTLQLELETLLSSASRRLRVLEAETQI |
Retrocopy | MSELKDCPLQFHDFKSVDHLKVCPRYTAVLAHSEDDGIGIE*LDTLQLELETLLSSASRRLRVLEAETQI |
|
Parental | LTDWQDKKGDRRILKLARDHELGAPPKHGKPKKQKLEGKTGHGPGPGPGRPKSKNVQPKIQEYEFTDDPI |
| LT.WQDKKGDR..LKL.RDHELG.PPKHGK.KKQKL.GKTGHGP.PGPGRPKSKNVQPKIQ.Y.FTDDPI |
Retrocopy | LTNWQDKKGDR*FLKLGRDHELGVPPKHGKHKKQKL*GKTGHGPSPGPGRPKSKNVQPKIQKY*FTDDPI |
|
Parental | DVPRIPKNDAPNRFWASVEPYCADITSEEVRTLEELLKPPEDEAEHYKIPPLGKHYSQRWAQEDLLEEQK |
| DVPRIPKNDAPNRFWASVEPYCA.ITSEEVRTLEELLKPP.DEAEHYKIPPLGKHYSQRW.QEDLLEEQK |
Retrocopy | DVPRIPKNDAPNRFWASVEPYCANITSEEVRTLEELLKPPKDEAEHYKIPPLGKHYSQRWSQEDLLEEQK |
|
Parental | DGARAAAVADKKKGLIGPLTELDTKDVDALLKKSEAQHEQPEDGCPFGALTQRLLQALVEENIISPMEDS |
| D...AAAVADKKKGLI..LTELDTKDVDALLKKSEAQHEQPED.CPFGALTQRLLQ.LVEENIIS.MEDS |
Retrocopy | DVTQAAAVADKKKGLIELLTELDTKDVDALLKKSEAQHEQPEDRCPFGALTQRLLQVLVEENIISSMEDS |
|
Parental | PIPDMSGKESGADGAS-TSPRNQNKPFSVPHTKSLESRIKEELIAQGLLESEDRPAEDSEDEVLAELRKR |
| PIPDMSGKESGADGA...SPRNQNKPF.VPHTKSLESRIKEELIAQGLLESEDRPAEDSEDEVLAELRKR |
Retrocopy | PIPDMSGKESGADGATPPSPRNQNKPFIVPHTKSLESRIKEELIAQGLLESEDRPAEDSEDEVLAELRKR |
|
Parental | QAELKALSAHNRTKKHDLLRLAKEEVSRQELRQRVRMADNEVMDAFRKIMAARQKKRTPTKKEKDQAWKT |
| QAELKALSAHNRTKKHDLLRLAK.EVS..ELRQRVRMADNEVMDAFRKIMAA.QKKRTPTKKEKD.AWKT |
Retrocopy | QAELKALSAHNRTKKHDLLRLAKKEVSLEELRQRVRMADNEVMDAFRKIMAAWQKKRTPTKKEKD*AWKT |
|
Parental | LKERESILKLLDG |
| LK.R..ILKLLDG |
Retrocopy | LKDRKRILKLLDG |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
Library |
Retrocopy expression |
Parental gene expression |
SRP017611_brain |
0 .00 RPM |
31 .78 RPM |
SRP017611_kidney |
0 .00 RPM |
16 .61 RPM |
SRP017611_liver |
0 .00 RPM |
11 .30 RPM |
Rattus norvegicus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_rnor_1273 retrocopy.
Rattus norvegicus was not studied using FANTOM5 data.
retro_rnor_1273 was not experimentally validated.
Retrocopy orthology:
Retrocopy retro_rnor_1273 has 0 orthologous retrocopies within eutheria group .
Parental genes homology:
Parental genes homology involve
5 parental genes, and
8 retrocopies.