RetrogeneDB ID: | retro_cfam_2113 | ||
Retrocopylocation | Organism: | Dog (Canis familiaris) | |
Coordinates: | X:94449739..94450312(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RRM2 | ||
Ensembl ID: | ENSCAFG00000003409 | ||
Aliases: | None | ||
Description: | ribonucleotide reductase M2 [Source:HGNC Symbol;Acc:10452] |
Percent Identity: | 75.65 % |
Parental protein coverage: | 50.13 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | SKTARRIFQEPA-EPKTKVLAPSAEEEPLLRENPRRFVIFPIEYHDIWQMYKKAEASFWTAEEVDLSKDI |
S..ARRIFQ.PA...KT.V.APS.E.E.LL.ENP...VI..IEYH.IWQMYKKAEASFWTAEEVDLSKDI | |
Retrocopy | SLLARRIFQQPA<QAKTEVFAPSMENESLLGENPCHVVILLIEYHGIWQMYKKAEASFWTAEEVDLSKDI |
Parental | QHWESLKPEERYFISHVLAFFAASDGIVN-ENLVERFSQEVQITEARCFYGFQIAMENIHSEMYSLLIDT |
QHWES.KPEERYFI.H.LAFF.ASDGIV...NLVE.F.QEVQI.EA.CFYGFQI..ENI.SEMYSLLI.T | |
Retrocopy | QHWESSKPEERYFIPHILAFFVASDGIVK>DNLVEWFIQEVQIIEALCFYGFQIVVENINSEMYSLLIVT |
Parental | YIKDSKEREFLFNAIETMPCVKKKADWALRWIGDKEATYGERVVAFAAVEGIF |
.IKDSKEREFLFNAIETM.C.KKKAD..L.WIG.KEATYG....AFAA.E..F | |
Retrocopy | FIKDSKEREFLFNAIETMSCIKKKADRTLHWIGGKEATYGKWIIAFAAMEAVF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012049_cerebellum | 0 .00 RPM | 16 .42 RPM |
SRP017611_brain | 0 .00 RPM | 0 .24 RPM |
SRP017611_kidney | 0 .00 RPM | 4 .69 RPM |
SRP017611_liver | 0 .00 RPM | 0 .22 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000003409 | 1 retrocopy |
retro_cfam_2113 ,
|
Callithrix jacchus | ENSCJAG00000006533 | 3 retrocopies | |
Cavia porcellus | ENSCPOG00000008652 | 1 retrocopy | |
Erinaceus europaeus | ENSEEUG00000009755 | 2 retrocopies | |
Echinops telfairi | ENSETEG00000015797 | 2 retrocopies | |
Homo sapiens | ENSG00000171848 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000000121 | 3 retrocopies | |
Microcebus murinus | ENSMICG00000012789 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000010596 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000002057 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000014763 | 1 retrocopy | |
Mus musculus | ENSMUSG00000020649 | 2 retrocopies | |
Nomascus leucogenys | ENSNLEG00000013733 | 2 retrocopies | |
Otolemur garnettii | ENSOGAG00000007075 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000012656 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000023272 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000021742 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000017209 | 1 retrocopy |