RetrogeneDB ID: | retro_eeur_421 | ||
Retrocopylocation | Organism: | Hedgehog (Erinaceus europaeus) | |
Coordinates: | scaffold_294359:3027..3723(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RRM2 | ||
Ensembl ID: | ENSEEUG00000009755 | ||
Aliases: | None | ||
Description: | ribonucleotide reductase M2 [Source:HGNC Symbol;Acc:10452] |
Percent Identity: | 94.85 % |
Parental protein coverage: | 52.13 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | EAPVPSLEEEPLLRENP-RRFVIFPIEYHDIWQMYKKAEASFWTAEEVDLSKDIQHWEALKPEERYFISH |
E..VPS.EEEPLLREN..RRFVIFPI.YHDIWQMYKKAEASFWTAEEVDLSKDIQHWEALKPEERYFISH | |
Retrocopy | ELQVPSIEEEPLLRENHHRRFVIFPIKYHDIWQMYKKAEASFWTAEEVDLSKDIQHWEALKPEERYFISH |
Parental | VLAFFAASDGIVNENLVERFSQEVQITEARCFYGFQIAMENIHSEMYSLLIDTYIKDSKEREFLFNAIET |
VLAFFA.SDGIVNENLV.RFSQEVQITEA.CFYGFQIAMENIHSEMYSLLIDTYIK.SKEREFLFNAIET | |
Retrocopy | VLAFFADSDGIVNENLVKRFSQEVQITEACCFYGFQIAMENIHSEMYSLLIDTYIKHSKEREFLFNAIET |
Parental | MPCVKKKADWALRWIGDKEATYGERVVAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLH |
MPCVKKKADWAL.WIGDKEATYGER.VAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLH | |
Retrocopy | MPCVKKKADWALHWIGDKEATYGER-VAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLH |
Parental | CDFACLMFKHLLHKPSEQRVREI |
CDFACLMFKHLLHKPSEQRVREI | |
Retrocopy | CDFACLMFKHLLHKPSEQRVREI |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 0 .64 RPM |
SRP017611_kidney | 0 .00 RPM | 0 .19 RPM |
SRP017611_liver | 0 .00 RPM | 1 .45 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000003409 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000006533 | 3 retrocopies | |
Cavia porcellus | ENSCPOG00000008652 | 1 retrocopy | |
Erinaceus europaeus | ENSEEUG00000009755 | 2 retrocopies |
retro_eeur_421 , retro_eeur_585,
|
Echinops telfairi | ENSETEG00000015797 | 2 retrocopies | |
Homo sapiens | ENSG00000171848 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000000121 | 3 retrocopies | |
Microcebus murinus | ENSMICG00000012789 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000010596 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000002057 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000014763 | 1 retrocopy | |
Mus musculus | ENSMUSG00000020649 | 2 retrocopies | |
Nomascus leucogenys | ENSNLEG00000013733 | 2 retrocopies | |
Otolemur garnettii | ENSOGAG00000007075 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000012656 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000023272 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000021742 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000017209 | 1 retrocopy |