Parental gene:

ENSECAG00000025080

Aliases:None
Description:None
Organism:Horse (Equus caballus)
Coordinates:11:23066759..23070480(-)


>ENSECAG00000025080
AGTATGCTCAGGCTTCAGAAGAGACTTGCCTCCAGTGTCCTCCGCTGTGGCAAAAAGAAGGTCTGGCTGGACCCCAATGA
GACCAATGAAATCGCCAATGCCAACTCCCGTCAGCAGATCCGGAAGCTGATCAAAGATGGCCTGATCATCCGGAAGCCTG
TGACTGTCCATTCCCGGGCTCGATGCCGGAAAAACACCTTGGCCCGCCGGAAGGGCAGGCATATGGGCATCGGTAAGCGA
AAGGGTACTGCCAATGCTCGAATGCCAGAGAAGGTAACCTGGATGAGGAGGATGAGAATCCTGCGCCGGCTGCTTAGAAG
ATACCGTGAATCTAAGAAGATTGACCGCCACATGTATCACAGCCTGTACCTGAAAGTGAAGGGTAATGTGTTCAAAAACA
AGCGGATTCTCATGGAACACATCCACAAGCTGAAGGCAGACAAGGCTCGCAAGAAGCTTCTGGCGGACCAGGCTGAGGCC
CGCAGGTCTAAGACCAAGGAAGCACGCAAGCGCCGCGAAGAGCGGCTCCAGGCCAAGAAAGAGGAAATCATCAAGACTCT
CTCCAAGGAGGAAGAGACCAAGAAATAA

Library Parental gene expression (RPM)
SRP021940_synovial_membrane 0 .44 RPM
SRP021940_embryo 0 .43 RPM
SRP021940_cerebellum 0 .10 RPM
SRP021940_testis 0 .13 RPM
SRP021940_placental_villous 0 .29 RPM
SRP021940_articular_cartilage 0 .06 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000004121 possible_ortholog 5 retrogenes
Canis familiaris ENSCAFG00000016493 possible_ortholog 14 retrogenes
Choloepus hoffmanni ENSCHOG00000006023 possible_ortholog 7 retrogenes
Callithrix jacchus ENSCJAG00000008520 possible_ortholog 4 retrogenes
Dipodomys ordii ENSDORG00000004330 possible_ortholog 1 retrogene
Homo sapiens ENSG00000108298 possible_ortholog 21 retrogenes
Loxodonta africana ENSLAFG00000018257 possible_ortholog 3 retrogenes
Macropus eugenii ENSMEUG00000013900 possible_ortholog 10 retrogenes
Myotis lucifugus ENSMLUG00000012555 ortholog_one2one 11 retrogenes
Macaca mulatta ENSMMUG00000004235 ortholog_one2one 2 retrogenes
Monodelphis domestica ENSMODG00000012693 possible_ortholog 2 retrogenes
Mustela putorius furo ENSMPUG00000015041 possible_ortholog 5 retrogenes
Mus musculus ENSMUSG00000017404 possible_ortholog 25 retrogenes
Nomascus leucogenys ENSNLEG00000000748 possible_ortholog 19 retrogenes
Pongo abelii ENSPPYG00000008492 possible_ortholog 20 retrogenes
Pan troglodytes ENSPTRG00000009086 possible_ortholog 22 retrogenes
Pteropus vampyrus ENSPVAG00000008498 possible_ortholog 9 retrogenes
Rattus norvegicus ENSRNOG00000004741 possible_ortholog 37 retrogenes
Sarcophilus harrisii ENSSHAG00000016482 possible_ortholog 4 retrogenes
Sus scrofa ENSSSCG00000017509 possible_ortholog 3 retrogenes
Ictidomys tridecemlineatus ENSSTOG00000011120 ortholog_one2one 5 retrogenes
Tursiops truncatus ENSTTRG00000006687 possible_ortholog 4 retrogenes

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ecab_104 99.40 85.13
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2. retro_ecab_319 70.18 57.44
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3. retro_ecab_351 99.49 100.00
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4. retro_ecab_456 56.45 94.87
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5. retro_ecab_497 57.52 56.92
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6. retro_ecab_905 66.88 80.51
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Download FASTA sequences of all ENSECAG00000025080 retrocopies