>retro_cfam_342
GTGGCGGCCATGAAGACCCTGAACCCCAAGGCCAAGGTGGCCCGAGCCTAGATGGCACTGGCAGTTAACATCAGTGCGGC
CCAGGACATGCTGAGGACCAACTTGGGGCCTAAGGGCACAGTGAAGATGCTTGTTTTTGATGCTAGAGACATTAACCTTA
CTAAAGATAGCTGTGTGCTGCTTCATGAAATGCAAATTCAATACCCAATAGCCTCCTTAATAGCCAAAGTGGCAACAGCC
CAGGATGACATAACTGGTGATGGTACCACTTCTGATGTCTTAATCATTGGAAAGCTACAGAAACAGGCAGATTTCAACAT
TTCTGAAGGTCTTCATCCCAGAATAAATAACAAAGATTTGAAGCTGCAAAGGAAAAGGCACTTCAGTTTTTGGAACAAGT
CAAAGTAAGCAAAGAAATGGGCTTAAAAACACATATAAATGTGGCCAGAACATCTATACGTACTGAAGTGCATGCTGAAC
TTAACAGAGGCTATAGTGGACTCCATTTTGGGCATTAAAAAACAAGATGAACTTATTGACCTTTTCATGTTGAGATCGTG
GAAATGAAAAAGAAATCTGAAACTGATACAAGCTTAATCAGAGGTCTTGTTTTGGACCATGGGGTGCTTATCCTGGTATG
AAAAAAAGAGTAGAAGATGCATACATCCTCATGTGCAGTGTTTCAGAATATGAAAAAAGT
ORF - retro_cfam_342 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
65.85 % |
Parental protein coverage: |
96.41 % |
Number of stop codons detected: |
1 |
Number of frameshifts detected |
4 |
Retrocopy - Parental Gene Alignment:
Parental | MAAVQAINSKAEVARAQAALAVNICAARGLQDVLRTNLGPKGTLKMLVSGAGDIKLTKDGNVLLHEMQIQ |
| .AA....N.KA.VARA..ALAVNI.AA...QD.LRTNLGPKGT.KMLV..A.DI.LTKD..VLLHEMQIQ |
Retrocopy | VAAMKTLNPKAKVARA*MALAVNISAA---QDMLRTNLGPKGTVKMLVFDARDINLTKDSCVLLHEMQIQ |
|
Parental | HPTASLIAKVATAQDDITGDGTTSNVLIIGELLKQADLYISEGLHPRIIA-EGFEAAKIKALEVLEEVKV |
| .P.ASLIAKVATAQDDITGDGTTS.VLIIG.L.KQAD..ISEGLHPRI.....FEAAK.KAL..LE.VKV |
Retrocopy | YPIASLIAKVATAQDDITGDGTTSDVLIIGKLQKQADFNISEGLHPRINN<QRFEAAKEKALQFLEQVKV |
|
Parental | NKEMKREILLDVARTSLQTKVHAE-LADVLIEAVVDSVLAIRRPGYPIDLFM-VEIMEMKHKSETDTKLI |
| .KEM.......VARTS..T.VHAE.L..............I......IDLFM.VEI.EMK.KSETDT.LI |
Retrocopy | SKEMGLKTHINVARTSIRTEVHAE>LTEAIVDSIL----GIKKQDELIDLFM<VEIVEMKKKSETDTSLI |
|
Parental | RGLVLDHGT-RHPDMKKQVEDAFILTCNVSLEYEKT |
| RGLVLDHG....P.MKK.VEDA.IL.C.VS.EYEK. |
Retrocopy | RGLVLDHGV<AYPGMKKRVEDAYILMCSVS-EYEKS |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
Library |
Retrocopy expression |
Parental gene expression |
SRP012049_cerebellum |
0 .08 RPM |
0 .63 RPM |
SRP017611_brain |
0 .00 RPM |
0 .48 RPM |
SRP017611_kidney |
0 .07 RPM |
1 .25 RPM |
SRP017611_liver |
0 .00 RPM |
0 .29 RPM |
Canis familiaris was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_cfam_342 retrocopy.
Canis familiaris was not studied using FANTOM5 data.
retro_cfam_342 was not experimentally validated.
Retrocopy orthology:
Retrocopy retro_cfam_342 has 0 orthologous retrocopies within eutheria group .
Parental genes homology:
Parental genes homology involve
4 parental genes, and
4 retrocopies.