RetrogeneDB ID:

retro_ogar_217

Retrocopy
location
Organism:Bushbaby (Otolemur garnettii)
Coordinates:GL873706.1:1931324..1932920(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:ENSOGAG00000027127
Aliases:None
Status:KNOWN_PROTEIN_CODING
Parental gene
information
Parental gene summary:
Parental gene symbol:CCT6B
Ensembl ID:ENSOGAG00000009862
Aliases:None
Description:chaperonin containing TCP1, subunit 6B (zeta 2) [Source:HGNC Symbol;Acc:1621]


Retrocopy-Parental alignment summary:






>retro_ogar_217
ATGGCGGCCGTGAAGACCCTGAACCCTAAGGCCGAGGTGGCCCGAGCCCAGGCGGCGCTAGCGGTGAACATTAGCGCGGC
TCGGGGGCTGCAGGACGTGCTGAGGACCAACTTGGGGCCTAAAGGCACCATGAAGATGCTGGTTTCTGGCGCTGGAGACA
TCAAGCTTACCAAAGACGGCAATGTACTGCTTCACGAAATGCAAATTCAACACCCAACAGCCTCCTTAATAGCAAAAGTG
GCAACAGCCCAGGATGACATAACTGGTGATGGTACTACTTCCAATGTCCTAATCATTGGAGAGCTGCTGAAACAGGCGGA
TCTCTACATTTCTGAAGGTCTTCATCCCAGAATAGTCACTGAAGGATTTGAAGCTGCAAAGGAAAAGGCCCTTAACTTTT
TGGAACAAGTCAAAGTAAGCAGAGAGATGGACAGGGAAATACTTATAGATGTGGCCAGAACATCTCTTCGAACTAAAGTT
CATGCTGAACTTGCAGATGTCTTAACAGAGGCTGTTGTGGATGCCGTTTTGGCCATTAAAAGAAAAGATGAGCCTATTGA
CCTCTTCATGGTTGAGATCATGGAGATGAAACATAAATCTGAAACTGATACAAGCTTAATCAGAGGGCTTGTTTTGGACC
ATGGAGCCCGGCATCCTGATATGAAGAAAAGAGTAGAAGATGCGTACATCCTCACGTGCAATGTGTCATTAGAATATGAA
AAAACAGAAGTGAATTCTGGCTTTTTTTACAAGAGTGCAGAAGAGAGAGAGAAACTAGTAAAAGCGGAAAGAAAATTCAT
TGAAGATAGAGTTAAAAAAATAATAGAACTGAAAAAGAAAGTCTGTGGTGATTCAGATAAAGGATTTGTTGTTATTAACC
AAAAGGGAATTGACCCCTTTTCCTTAGATGCTCTTGCAAAAGAAGGCATAGTAGCTCTGCGCAGGGCTAAAAGGAGAAAT
ATGGAGAGGCTGACTCTTGCTTGTGGTGGGATAGCTCTAAATTCTTTTGATGACCTAAATCCTGACTGTTTGGGACATGG
GGGACTTGTTTATGAGTATACATTGGGAGAAGAGAAGTTCACCTTTATTGAGAAATGTAACAACCCTCGCTCTGTCACAT
TACTGGTCAAAGGACCAAATAAGCACACACTCACTCAAATCAAAGATGCAATAAGAGATGGCTTGAGGGCTGTCAAAAAT
GCTATTGATGATGGCTGTGTGGTTCCGGGTGCTGGTGCAGTAGAAGTGGCGATGGCAGAAGCCCTGGTGAAATACAAGCA
CAGTGTAAAGGGCCAAGCCCAACTTGGAGTCCAGGCATTTGCTGATGCATTGCTCATTATTCCAAAGGTTCTTGCTCAGA
ACTCTGGTTTTGACCTTCAGGAAACATTAGTTAAAATTCAGGCTGAACATTCAGAATCAGGTCAACTTGTGGGTGTGGAC
TTGAACACAGGTGAGCCAATGGTAGCAGCAGAAGTAGGCGTATGGGATAACTATTGTGTAAAGAAACAGCTTCTTCACTC
CTGCACTGTGATTGCTACCAACATTCTCTTGGTTGATGAGATCATGCGAGCTGGAATGTCTTCTCTGAAAGGCTGA

ORF - retro_ogar_217 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 72.57 %
Parental protein coverage: 100. %
Number of stop codons detected: 0
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalMAAIKAVNAKAEVARAQAALAVNICAARGLQDVLRTNLGPKGTMKMLVSGAGDIKLTKDGNVLLHEMQIQ
MAA.K..N.KAEVARAQAALAVNI.AARGLQDVLRTNLGPKGTMKMLVSGAGDIKLTKDGNVLLHEMQIQ
RetrocopyMAAVKTLNPKAEVARAQAALAVNISAARGLQDVLRTNLGPKGTMKMLVSGAGDIKLTKDGNVLLHEMQIQ
ParentalHPTASLIAKVATAQDDVTGDGTTSNVLIIGELLRQADLYISEGLHPRIIAEGLEVAKIKALEVLEEIKVQ
HPTASLIAKVATAQDD.TGDGTTSNVLIIGELL.QADLYISEGLHPRI..EG.E.AK.KAL..LE..KV.
RetrocopyHPTASLIAKVATAQDDITGDGTTSNVLIIGELLKQADLYISEGLHPRIVTEGFEAAKEKALNFLEQVKVS
ParentalKDMERTILLDVARTSLQTKVHVELADILTEVVLAACLEFSRPGPGSNLPAPVYMASALTTEYRCPSELEL
..M.R.IL.DVARTSL.TKVH.E....L..V...A.............P....M...............L
RetrocopyREMDREILIDVARTSLRTKVHAE----LADVLTEAVVDAVLAIKRKDEPIDLFMVEIMEMKHKSETDTSL
ParentalIRGLVLDHGVRHPDMKKRVEDAFILTCNVSLEYEKTEVSSGFFYKTAEEKEKLVKAERKFIDNRVQKIID
IRGLVLDHG.RHPDMKKRVEDA.ILTCNVSLEYEKTEV.SGFFYK.AEE.EKLVKAERKFI..RV.KII.
RetrocopyIRGLVLDHGARHPDMKKRVEDAYILTCNVSLEYEKTEVNSGFFYKSAEEREKLVKAERKFIEDRVKKIIE
ParentalLKDRVCAELDKGFVVINQKGIDPFSLDTLAKHGIVALRRAKRRNMERLSLACGGIPVNSLEDLHIDCLGH
LK..VC...DKGFVVINQKGIDPFSLD.LAK.GIVALRRAKRRNMERL.LACGGI..NS..DL..DCLGH
RetrocopyLKKKVCGDSDKGFVVINQKGIDPFSLDALAKEGIVALRRAKRRNMERLTLACGGIALNSFDDLNPDCLGH
ParentalADLVYEYTLFNHLDFLFFQQCLGVNGLHCLIFGAFQKVCLRGKDAITWRVVPIVSFLPIGCVVPGAGAAE
..LVYEYTL.....F.F...C........L..G.........KDAI.............GCVVPGAGA.E
RetrocopyGGLVYEYTL-GEEKFTFIEKCNNPRSVTLLVKGPNKHTLTQIKDAIRDGLRAVKNAIDDGCVVPGAGAVE
ParentalVAIAEALLVYKHSIKGRARLGVQAFADALLIIPKVLAQNSGYDPQETLVKVQAEHLDSKQLVGIDLNTGE
VA.AEAL..YKHS.KG.A.LGVQAFADALLIIPKVLAQNSG.D.QETLVK.QAEH..S.QLVG.DLNTGE
RetrocopyVAMAEALVKYKHSVKGQAQLGVQAFADALLIIPKVLAQNSGFDLQETLVKIQAEHSESGQLVGVDLNTGE
ParentalPMVAADAGVWDNYCVKKQLLHSCTVIATNILLVDEIMRAGMSSLKG
PMVAA..GVWDNYCVKKQLLHSCTVIATNILLVDEIMRAGMSSLKG
RetrocopyPMVAAEVGVWDNYCVKKQLLHSCTVIATNILLVDEIMRAGMSSLKG

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






RNA-Seq - click to see more details

Otolemur garnettii was not studied using RNA-Seq expression data.

ChIP-Seq - click to see more details

Otolemur garnettii was not studied using ChIP-Seq data.

EST - click to see more details

Otolemur garnettii was not studied using EST data.

TSS - click to see more details

Otolemur garnettii was not studied using FANTOM5 data.

Lab - click to see more details

retro_ogar_217 was not experimentally validated.

Retrocopy orthology:
Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.
Parental genes homology:
Parental genes homology involve 2 parental genes, and 2 retrocopies.

Species Parental gene accession Retrocopies number
Canis familiaris ENSCAFG000000182981 retrocopy
retro_cfam_342,
Otolemur garnettii ENSOGAG00000009862 1 retrocopy
retro_ogar_217 ,


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