Parental gene:

CCT6A, ENSCAFG00000010149

Aliases:None
Description:chaperonin containing TCP1, subunit 6A (zeta 1) [Source:HGNC Symbol;Acc:1620]
Organism:Dog (Canis familiaris)
Coordinates:6:546372..556561(+)


>ENSCAFG00000010149
ATGGCGGCCGTGAAGACCCTGAACCCCAAGGCCGAGGTGGCCCGCGCCCAGGCGGCGCTGGCGGTCAACATCAGCGCGGC
CCGGGGGCTGCAGGACGTGCTGAGGACCAACTTGGGGCCTAAGGGCACCATGAAGATGCTCGTGTCTGGTGCTGGAGACA
TCAAGCTTACTAAAGATGGCAATGTGCTGCTTCATGAAATGCAAATTCAACACCCAACAGCCTCCCTAATAGCCAAAGTA
GCAACAGCCCAGGATGACATAACTGGTGATGGTACCACATCCAATGTCCTAATCATTGGAGAGCTACTGAAACAGGCGGA
TCTCTACATTTCTGAAGGTCTTCATCCCAGAATAATAACAGAAGGATTTGAAGCTGCAAAGGAAAAGGCACTTCAGTTTT
TGGAACAAGTCAAAGTAAGCAAAGAAATGGACAGGGAAACACTTATAGATGTGGCCAGAACATCTCTACGTACAAAAGTG
CATGCTGAACTTGCTGATGTCTTAACAGAGGCTGTAGTGGACTCGATTTTGGCCATTAAAAAACCAGATGAACCTATTGA
TCTCTTCATGGTTGAAATCATGGAGATGAAACATAAATCTGAAACTGATACAAGCTTAATCAGAGGTCTTGTTTTGGACC
ATGGGGCACGGCATCCTGATATGAAAAAAAGAGTAGAAGATGCATACATCCTCACATGCAATGTGTCCTTAGAGTATGAA
AAAACAGAAGTGAATTCTGGGTTTTTTTACAAGAGTGCAGAAGAGAGAGAGAAACTCGTAAAAGCTGAAAGAAAATTCAT
TGAAGATAGAGTTAAAAAAATAATAGAACTGAAAAAGAAAGTCTGTGGTGATTCAGATAAAGGATTTGTTGTTATTAATC
AAAAGGGAATCGACCCCTTTTCCTTAGATGCTCTTGCGAAAGAAGGCATAGTAGCTCTACGTAGAGCTAAAAGGAGAAAT
ATGGAAAGGCTGACTCTTGCTTGTGGTGGAGTAGCTCTAAATTCTTTCGATGACCTAAATCCTGATTGTTTGGGACATGC
AGGACTTGTCTATGAGTATACGTTGGGAGAAGAGAAATTCACTTTCATTGAGAAGTGTAACAATCCTCGCTCTGTCACAT
TATTGATCAAAGGACCAAATAAGCACACACTCACTCAAATCAAAGATGCAATAAGAGATGGCTTGAGGGCTGTTAAAAAT
GCTATTGATGATGGCTGTGTAGTTCCGGGTGCGGGTGCAGTGGAAGTGGCAATGGCAGAAGCCTTGATTAAATATAAGCC
CAGTGTAAAGGGGAGGGCCCAGCTGGGAGTTCAAGCATTTGCTGATGCATTGCTCATTATTCCCAAGGTTCTTGCTCAGA
ACTCTGGTTTTGACCTCATACATAAGACCTTTGTTGTCAATAGCATTTCCATCCAAGAGATTTTAAGAATACTGGGTTAC
TTTTCAGGTGAGCCAATGGTAGCCGCCGAAGTAGGCATATGGGATAACTATTGTGTAAAGAAACAGCTTCTTCACTCTTG
CACTGTGATTGCCACCAACATCCTCCTGGTTGACGAGATCATGCGAGCTGGAATGTCTTCTCTGAAAGGTTGA

Library Parental gene expression (RPM)
SRP017611_brain 68 .83 RPM
SRP017611_kidney 81 .82 RPM
SRP017611_liver 33 .21 RPM
SRP012049_cerebellum 88 .74 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000016077 ortholog_one2one 1 retrogene
retro_amel_855,
Canis familiaris ENSCAFG00000018298 within_species_paralog 1 retrogene
retro_cfam_342,
Choloepus hoffmanni ENSCHOG00000000654 ortholog_one2one 3 retrogenes
retro_chof_1183, retro_chof_1193, retro_chof_150,
Callithrix jacchus ENSCJAG00000021279 ortholog_one2one 2 retrogenes
retro_cjac_1320, retro_cjac_580,
Dipodomys ordii ENSDORG00000001249 ortholog_one2one 1 retrogene
retro_dord_617,
Felis catus ENSFCAG00000027654 ortholog_one2one 2 retrogenes
retro_fcat_1102, retro_fcat_320,
Homo sapiens ENSG00000146731 ortholog_one2one 2 retrogenes
retro_hsap_2741, retro_hsap_3290,
Gorilla gorilla ENSGGOG00000011439 ortholog_one2many 1 retrogene
retro_ggor_133,
Loxodonta africana ENSLAFG00000012791 ortholog_one2one 1 retrogene
retro_lafr_808,
Macaca mulatta ENSMMUG00000015272 ortholog_one2many 1 retrogene
retro_mmul_2582,
Monodelphis domestica ENSMODG00000006565 ortholog_one2one 1 retrogene
retro_mdom_1330,
Nomascus leucogenys ENSNLEG00000015664 ortholog_one2one 1 retrogene
retro_nleu_1355,
Oryctolagus cuniculus ENSOCUG00000017674 ortholog_one2one 1 retrogene
retro_ocun_468,
Procavia capensis ENSPCAG00000015532 ortholog_one2one 1 retrogene
retro_pcap_263,
Pongo abelii ENSPPYG00000025820 ortholog_one2many 1 retrogene
retro_pabe_2719,
Pan troglodytes ENSPTRG00000019206 ortholog_one2one 2 retrogenes
retro_ptro_1854, retro_ptro_2225,
Pteropus vampyrus ENSPVAG00000001421 ortholog_one2one 1 retrogene
retro_pvam_663,
Rattus norvegicus ENSRNOG00000000923 ortholog_one2many 1 retrogene
retro_rnor_2226,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cfam_431 86.55 73.77
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Download FASTA sequences of all ENSCAFG00000010149 retrocopies