>retro_cfam_66
ATGGAGCCTCTTACAGCTTACCCTTTAAGACGTTCAGGGTCAAAAGCAAAGGTATTTGCAGTTTTACTGTCTATGGTTCT
ATGCACAGTAATGCTATTTCTTCTACAACTAAAATTCCTAAAACCTAAAATCAACAGCTTTTATACCTTTGAAGTGAAAG
ATGCAAAAGGAAGAACAGTTTCTCTGGAAAAGTTTAAAGGCAAAGTTACACTAGTTGTAAACGTGGCCAGTGACTGCCAA
CTCAGAGACAGAAATTACTTAGCAGTGCAGGAACTGCACAAGGAGTTTGGACCATTCCACTTCAGCGTCCTGGCCTTCCC
ATGCAATCAGTTCGGAGAATCGGAGCCCTTCCCAAGCAAGGAAGTGGTGTCTTTTGCAAGAAATAACTATGGAGCGACAT
TCCCCATCTTCCACAAGATTAAGATCCTAGGATCTGAAGCGGACCCTGCATTTAGATTTCTTGTTGATTCTTCAAAGAAG
GAACCAAGGTGGAATTTTTGGAAGTATCTGGTCAACCCTGAGGAACAAGTTGTGAAGTCTTGGAGGCCAGAGGAACCCAT
TGAAGTCATCAGGCCTGAGATAGCAGCGCTGGTTACACAAATGATCCTAAGAAAGAAAGACGACCTATGA
ORF - retro_cfam_66 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
97.13 % |
Parental protein coverage: |
100. % |
Number of stop codons detected: |
0 |
Number of frameshifts detected |
0 |
Retrocopy - Parental Gene Alignment:
Parental | MEPLTAYPLRCSGSKAKVFAVLLSMVLCTVMLFLLQLKFLKPKINSFYTFEVKDAKGRTVSLEKFKGKVT |
| MEPLTAYPLR.SGSKAKVFAVLLSMVLCTVMLFLLQLKFLKPKINSFYTFEVKDAKGRTVSLEKFKGKVT |
Retrocopy | MEPLTAYPLRRSGSKAKVFAVLLSMVLCTVMLFLLQLKFLKPKINSFYTFEVKDAKGRTVSLEKFKGKVT |
|
Parental | LVVNVASDCQLTDRNYLALQELHKEFGPFHFSVLAFPCNQFGESEPRPSKEVVSFARNNYGATFPIFHKI |
| LVVNVASDCQL.DRNYLA.QELHKEFGPFHFSVLAFPCNQFGESEP.PSKEVVSFARNNYGATFPIFHKI |
Retrocopy | LVVNVASDCQLRDRNYLAVQELHKEFGPFHFSVLAFPCNQFGESEPFPSKEVVSFARNNYGATFPIFHKI |
|
Parental | KILGSEADPAFRFLVDSSKKEPRWNFWKYLVNPEGQVVKSWRPEEPIEVIRPEIAALVRQMILRKKDDL |
| KILGSEADPAFRFLVDSSKKEPRWNFWKYLVNPE.QVVKSWRPEEPIEVIRPEIAALV.QMILRKKDDL |
Retrocopy | KILGSEADPAFRFLVDSSKKEPRWNFWKYLVNPEEQVVKSWRPEEPIEVIRPEIAALVTQMILRKKDDL |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
Library |
Retrocopy expression |
Parental gene expression |
SRP012049_cerebellum |
0 .08 RPM |
11 .84 RPM |
SRP017611_brain |
0 .00 RPM |
4 .13 RPM |
SRP017611_kidney |
0 .00 RPM |
6 .01 RPM |
SRP017611_liver |
0 .00 RPM |
0 .44 RPM |
Canis familiaris was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_cfam_66 retrocopy.
Canis familiaris was not studied using FANTOM5 data.
retro_cfam_66 was not experimentally validated.
Retrocopy orthology:
Retrocopy retro_cfam_66 has 0 orthologous retrocopies within eutheria group .
Parental genes homology:
Parental genes homology involve
3 parental genes, and
4 retrocopies.