RetrogeneDB ID: | retro_tsyr_1170 | ||
Retrocopylocation | Organism: | Tarsier (Tarsius syrichta) | |
Coordinates: | scaffold_333422:468..1049(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSTSYG00000012413 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 82.56 % |
Parental protein coverage: | 92.34 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | MEPLTAYPLKCSGPKAKVFAVLLSMVLCTVMLFLLQLKFLKPKINSFYAFEVKDAKGRNVSLEKFKGKVS |
MEPL..Y.LKC.GPKAKVFA.LLS.VLCTVM.F.LQ.KFLKPKINSFYAFEVKD.KGR.VSLE.FKGKVS | |
Retrocopy | MEPLAVYSLKCLGPKAKVFAFLLSVVLCTVMIFSLQQKFLKPKINSFYAFEVKDVKGRTVSLENFKGKVS |
Parental | LVVNVASDCQLTDRNYLALKELHREFGPSHFSVLAFPCNQFGESEPRPSKEVESFARKNYGVTF-PIFHK |
LV.NV..DCQLTD..YLALKELHREFGPSHFSVLAFPCNQFGESE..PSKEVESFARK.Y.V.F.P.FHK | |
Retrocopy | LVINVVKDCQLTDKDYLALKELHREFGPSHFSVLAFPCNQFGESERHPSKEVESFARKYYRVAF>PSFHK |
Parental | IKILGSDAEPAFR-FLVDSSKKEPRWNFWKYLVNPEGQVVKFWRPEEPTEVIRPD |
IKILGS...PAFR.F.VDSSKKEPR.NFWKYLVNPEGQ.VKF.RPEEP..VIRPD | |
Retrocopy | IKILGSEKGPAFR>FFVDSSKKEPRCNFWKYLVNPEGQIVKF*RPEEPIDVIRPD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000028869 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000010461 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000000641 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000012413 | 2 retrocopies |
retro_tsyr_1170 , retro_tsyr_2159,
|