RetrogeneDB ID: | retro_tsyr_2159 | ||
Retrocopylocation | Organism: | Tarsier (Tarsius syrichta) | |
Coordinates: | scaffold_97538:1944..2498(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSTSYG00000012413 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 95.16 % |
Parental protein coverage: | 88.52 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | MEPLTAYPLKCSGPKAKVFAVLLSMVLCTVMLFLLQLKFLKPKINSFYAFEVKDAKGRNVSLEKFKGKVS |
MEPLTAYP.KCSGPKAKVFAVLL.MVLCTVMLFLLQLKFLKPKINSFYAFEVKDAKGRNVSLE.FK.K.S | |
Retrocopy | MEPLTAYP*KCSGPKAKVFAVLLPMVLCTVMLFLLQLKFLKPKINSFYAFEVKDAKGRNVSLERFKSKIS |
Parental | LVVNVASDCQLTDRNYLALKELHREFGPSHFSVLAFPCNQFGESEPR-PSKEVESFARKNYGVTFPIFHK |
L.VNVASDCQLTDRNYLAL.ELHREFGPSHFSVLAFPCNQFGESEPR..SKEVESFARKNYGVTFPIFHK | |
Retrocopy | LAVNVASDCQLTDRNYLALTELHREFGPSHFSVLAFPCNQFGESEPR<LSKEVESFARKNYGVTFPIFHK |
Parental | IKILGSDAEPAFRFLVDSSKKEPRWNFWKYLVNPEGQVVKFWRPEE |
IKILGSDAEPAFRFLVDSSKKEPRWNFWKYLVNPEGQVVKFWRPEE | |
Retrocopy | IKILGSDAEPAFRFLVDSSKKEPRWNFWKYLVNPEGQVVKFWRPEE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000028869 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000010461 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000000641 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000012413 | 2 retrocopies |
retro_tsyr_1170, retro_tsyr_2159 ,
|