RetrogeneDB ID: | retro_chof_1090 | ||
Retrocopylocation | Organism: | Sloth (Choloepus hoffmanni) | |
Coordinates: | scaffold_197165:284..1058(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | FUCA1 | ||
Ensembl ID: | ENSCHOG00000012304 | ||
Aliases: | None | ||
Description: | fucosidase, alpha-L- 1, tissue [Source:HGNC Symbol;Acc:4006] |
Percent Identity: | 74.81 % |
Parental protein coverage: | 54.87 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 3 |
Parental | EMKLRGRRAALLQPGLLVLLVLGDAESNFGARRQPETQHRYTPDWPSLDSRPLPRWFDEAKFGVFVHWGV |
EM..R...AAL....LLVLL.L.DA...F.AR..P.TQH.Y..D..SLDSR.LP.WFDEA.FGVFVHWGV | |
Retrocopy | EMRSRAESAALSLLALLVLLLLRDAKCKFRARHKP*TQHYYARDRMSLDSRLLPSWFDEATFGVFVHWGV |
Parental | FSVPAWGSEWFWWHWKGEGLPQ-FQRFMKENYPPGFSYADFGPQFTAGFFQPEDWAELFQAAG-AKYVVL |
F.VPAWGSEWF.WHWK.EG.P...Q.FM..N.PPGFSYADF.PQFT.GFFQ.ED.AEL.QA.G.AKYVVL | |
Retrocopy | FLVPAWGSEWF*WHWKEEGRPH<YQCFMNDNCPPGFSYADFEPQFTEGFFQSEDQAELLQAMG<AKYVVL |
Parental | TTKHHEGFTNWPSPVSWNWNSQDLGPHRDLVGELGTALRKRNIRYGLYHSLLEWFHPLSLLDKKNGFKTQ |
TTK.HEGFTNWPSPVS.NWNSQDLG.H..LVGE.G.A..KR.I....YHSLLEWFH.L.LLDKKNGFKTQ | |
Retrocopy | TTKYHEGFTNWPSPVS*NWNSQDLGSHCGLVGEKGPAIPKRSICMDSYHSLLEWFHLLYLLDKKNGFKTQ |
Parental | HFVTAKTMPELYDLVNR-YKPDLIWSDGEWDCPYTYWNSTNFLSWLYNDSPV |
HFV.AKTMPELYDLV...YKPDLIWSDGEWDCP.TYWNSTNFLSW.YNDSPV | |
Retrocopy | HFVSAKTMPELYDLVDG<YKPDLIWSDGEWDCPDTYWNSTNFLSWFYNDSPV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000012304 | 2 retrocopies |
retro_chof_1090 , retro_chof_542,
|
Equus caballus | ENSECAG00000024652 | 1 retrocopy | |
Loxodonta africana | ENSLAFG00000015305 | 1 retrocopy | |
Microcebus murinus | ENSMICG00000007213 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000013160 | 1 retrocopy |