RetrogeneDB ID: | retro_chof_542 | ||
Retrocopylocation | Organism: | Sloth (Choloepus hoffmanni) | |
Coordinates: | scaffold_119414:417..1205(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | FUCA1 | ||
Ensembl ID: | ENSCHOG00000012304 | ||
Aliases: | None | ||
Description: | fucosidase, alpha-L- 1, tissue [Source:HGNC Symbol;Acc:4006] |
Percent Identity: | 82.09 % |
Parental protein coverage: | 55.3 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 6 |
Parental | PEMKLR-GRRAALLQPGLLVLLVLGDAE-SNFGARRQPETQ-HRYTPDWPSLDSR-PLPRWFDEAK-FGV |
PEM..R.G....LL.P.LLVLLVLGDAE.S.FGARRQPETQ.HRYTPDWPSL.SR.PLPR.F.EAK.FGV | |
Retrocopy | PEMRSRAGKSTPLLLPALLVLLVLGDAE>SQFGARRQPETQ>HRYTPDWPSLGSR>PLPRCFHEAK>FGV |
Parental | FVHWGVFSVPAWGSEWFWWHWKGEGLPQFQRFMKENYPPGFSYADFGPQFTAGFFQ-PEDWAELFQAAGA |
FVHWGVFSVPAWGSEW.WW.WKGEG.PQ.QRFM...YPP.FSYAD...QFTAGFF...E.WAELF.AAGA | |
Retrocopy | FVHWGVFSVPAWGSEWSWWPWKGEGWPQYQRFMNQYYPPSFSYADRRQQFTAGFFR<AEAWAELFRAAGA |
Parental | KYVVLTTKHHEGFTNWPSPVSWNWNSQDLGPHRDLVGELGTALRKRNIRYGLYHSLLEWFH-PLSLLDKK |
K.VVLTTKHHEGFTNW.SPVSWN.NSQDLGP.RDLVGELGTAL.KRNIRY.LYHSLLE.FH.PL.LLDKK | |
Retrocopy | K*VVLTTKHHEGFTNWRSPVSWN*NSQDLGPRRDLVGELGTALWKRNIRYELYHSLLERFH<PLYLLDKK |
Parental | NGFKTQHFVTAKTMPELYDLVNRYKPDLIWSDGEWDCPYTYWNSTNFLSWLYNDSPVK |
N.FK.QHFV.AKTMPELYDLVNRYKPDLI.SDGE.DCPYTY.NSTNFLSWLYNDSPVK | |
Retrocopy | NSFKRQHFVRAKTMPELYDLVNRYKPDLIASDGE*DCPYTYCNSTNFLSWLYNDSPVK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000012304 | 2 retrocopies |
retro_chof_1090, retro_chof_542 ,
|
Equus caballus | ENSECAG00000024652 | 1 retrocopy | |
Loxodonta africana | ENSLAFG00000015305 | 1 retrocopy | |
Microcebus murinus | ENSMICG00000007213 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000013160 | 1 retrocopy |