RetrogeneDB ID: | retro_chof_116 | ||
Retrocopylocation | Organism: | Sloth (Choloepus hoffmanni) | |
Coordinates: | GeneScaffold_2464:48148..48618(-) | ||
Located in intron of: | ENSCHOG00000003592 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CD53 | ||
Ensembl ID: | ENSCHOG00000010760 | ||
Aliases: | None | ||
Description: | CD53 molecule [Source:HGNC Symbol;Acc:1686] |
Percent Identity: | 87.97 % |
Parental protein coverage: | 73.02 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | VLFVFNLLFWFCGCCILGFGIYFLIHNNFGVLFHKLPSLTLGNVLIIVGSIIMVVAFLGCMGSIKENKCL |
V..VF.LLFWFCGCC.LGFGIYFLIHNNF.VLFH..PSLTLGNVLIIV.SIIMVVAFLGCMGSIKENKCL | |
Retrocopy | VCLVFSLLFWFCGCCVLGFGIYFLIHNNFRVLFHNFPSLTLGNVLIIVSSIIMVVAFLGCMGSIKENKCL |
Parental | LMSFFL-LLLIILLAEVTLAILLFVYEQKLSDYVAEGLTSSIQRYHSDNSTKAAWDSIQSFLQCCGINGT |
.MSFFL.LLLII.LAEVTLAILLFVYEQKLSD.VAEGLT.SIQ.YHSDNSTK.AWDSIQ.FLQCC.INGT | |
Retrocopy | FMSFFL<LLLIIPLAEVTLAILLFVYEQKLSDNVAEGLTRSIQHYHSDNSTKVAWDSIQLFLQCCYINGT |
Parental | SDWTGGPPESCPKDPQVK |
SDWT.GPPESCPKDPQ.K | |
Retrocopy | SDWTSGPPESCPKDPQAK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000003785 | 2 retrocopies | |
Choloepus hoffmanni | ENSCHOG00000010760 | 2 retrocopies |
retro_chof_116 , retro_chof_307,
|
Homo sapiens | ENSG00000143119 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000005468 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000000811 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000003649 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000016713 | 2 retrocopies | |
Pan troglodytes | ENSPTRG00000001085 | 1 retrocopy |