RetrogeneDB ID: | retro_chof_307 | ||
Retrocopylocation | Organism: | Sloth (Choloepus hoffmanni) | |
Coordinates: | GeneScaffold_6992:44700..45197(+) | ||
Located in intron of: | ENSCHOG00000008172 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CD53 | ||
Ensembl ID: | ENSCHOG00000010760 | ||
Aliases: | None | ||
Description: | CD53 molecule [Source:HGNC Symbol;Acc:1686] |
Percent Identity: | 74.56 % |
Parental protein coverage: | 78.14 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 1 |
Parental | MGMSTLKLLKYVLFVFNLLFWFCGCCILGFGIYFLIHNNFGVLFHKLPSLTLGNVLIIVGSIIMVVAFLG |
M..S.LKLLKYVLFVF.LLFWF.GCCILGFGIYFLIHNNFG.LFH..PSL..GN.L.I.GSI.MVVAFLG | |
Retrocopy | MHKSSLKLLKYVLFVFSLLFWFYGCCILGFGIYFLIHNNFGMLFHN-PSLMPGNTLVIMGSINMVVAFLG |
Parental | CMGSIKENKCLLMSFF-LLLLIILLAEVTLAILLFVYEQKLSDYVAEGLTSSIQRYHSDNSTKAAWDSIQ |
CMG.IK.NKCLL...F.LL.LIILL.EVTLAILLFVYE.KLSDYVAEGLT.SI..Y.SDNST..A.DSIQ | |
Retrocopy | CMGFIKDNKCLLI*SF<LLPLIILL-EVTLAILLFVYEEKLSDYVAEGLTRSIKSYYSDNST*MA*DSIQ |
Parental | SFLQCCGINGTSDWTGGPPESCPKDPQVK |
.FLQ.C..NGTSDW....PES.P...Q.K | |
Retrocopy | FFLQRCSVNGTSDWISSLPESRPSVSQAK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000003785 | 2 retrocopies | |
Choloepus hoffmanni | ENSCHOG00000010760 | 2 retrocopies |
retro_chof_116, retro_chof_307 ,
|
Homo sapiens | ENSG00000143119 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000005468 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000000811 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000003649 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000016713 | 2 retrocopies | |
Pan troglodytes | ENSPTRG00000001085 | 1 retrocopy |