RetrogeneDB ID: | retro_chof_1201 | ||
Retrocopylocation | Organism: | Sloth (Choloepus hoffmanni) | |
Coordinates: | scaffold_224062:518..1037(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL15 | ||
Ensembl ID: | ENSCHOG00000001114 | ||
Aliases: | None | ||
Description: | ribosomal protein L15 [Source:HGNC Symbol;Acc:10306] |
Percent Identity: | 88.44 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 0 |
Parental | MGAYKYIQELWRKKQSDVMRFLLRVRCWQYRQLSALHRAPRPTRPDKARRLGYKAKQGYVIYRIRVRRGG |
MGAYKYIQ.LWRKKQSDVMRFLLRVRCWQYRQLSALHRAPRPTRPD..R.LGYKAKQGYVI.RIRV..GG | |
Retrocopy | MGAYKYIQQLWRKKQSDVMRFLLRVRCWQYRQLSALHRAPRPTRPDEVRGLGYKAKQGYVICRIRVCCGG |
Parental | RKRPVPKGATYGKPVHHGVNQLKFARSLQSVAEERAGRHCGALRVLNSYWVGEDSTYKFFEVILIDPFHK |
.K.PVPK.ATYGKPVH..VNQLKFARSLQSVAEE.AGRHCG.LR.LNSY.V.EDST.KFFEVILIDPFHK | |
Retrocopy | HKCPVPKVATYGKPVHPSVNQLKFARSLQSVAEE*AGRHCGVLRILNSY*VDEDSTCKFFEVILIDPFHK |
Parental | AIRRNPDTQWITKPVHKHREMRGLTSAGRKSRG |
AIRRNPD.QWITKP.HKHREMRGLTSAGRKSRG | |
Retrocopy | AIRRNPDSQWITKPFHKHREMRGLTSAGRKSRG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000001114 | 6 retrocopies |
retro_chof_1201 , retro_chof_1253, retro_chof_1323, retro_chof_2246, retro_chof_357, retro_chof_877,
|
Equus caballus | ENSECAG00000010157 | 1 retrocopy | |
Procavia capensis | ENSPCAG00000011995 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000007244 | 5 retrocopies |