RetrogeneDB ID: | retro_chof_877 | ||
Retrocopylocation | Organism: | Sloth (Choloepus hoffmanni) | |
Coordinates: | scaffold_160153:1864..2283(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSCHOG00000003809 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL15 | ||
Ensembl ID: | ENSCHOG00000001114 | ||
Aliases: | None | ||
Description: | ribosomal protein L15 [Source:HGNC Symbol;Acc:10306] |
Percent Identity: | 77.46 % |
Parental protein coverage: | 80.92 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | SALHRAPRPTRPDKAR-RLGYKAKQGYVIYRIRVRRGGRKRPVPKGATYGKPVHHGVNQLKFARSLQSVA |
S.LH.......P.....RLGYKAKQGY.IYRI.V.RGG.K.PVP.GATYGKPVHHGVNQLKFARSL.SVA | |
Retrocopy | SSLHSTGPHVTPSLIKCRLGYKAKQGYIIYRI*VHRGGCKCPVPMGATYGKPVHHGVNQLKFARSLHSVA |
Parental | -EERAGRHCGALRVLNSYWVGEDSTYKFFEVILIDPFHKAIRRNPDTQWITKPVHKHREMRGLTSAGRKS |
..ERAG..C.ALRVLNSYWVGED.TY.FFEVILIDPFHKA.RRNPDTQWITK.VHKHRE.RGLTSAG.KS | |
Retrocopy | <KERAGP-CRALRVLNSYWVGEDFTYRFFEVILIDPFHKASRRNPDTQWITKLVHKHREIRGLTSAGHKS |
Parental | RG |
.G | |
Retrocopy | CG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000001114 | 6 retrocopies |
retro_chof_1201, retro_chof_1253, retro_chof_1323, retro_chof_2246, retro_chof_357, retro_chof_877 ,
|
Equus caballus | ENSECAG00000010157 | 1 retrocopy | |
Procavia capensis | ENSPCAG00000011995 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000007244 | 5 retrocopies |