RetrogeneDB ID: | retro_chof_1262 | ||
Retrocopylocation | Organism: | Sloth (Choloepus hoffmanni) | |
Coordinates: | scaffold_240195:13..571(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | C12orf29 | ||
Ensembl ID: | ENSCHOG00000011011 | ||
Aliases: | None | ||
Description: | chromosome 12 open reading frame 29 [Source:HGNC Symbol;Acc:25322] |
Percent Identity: | 96.24 % |
Parental protein coverage: | 57.76 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | GQPYLWARLDRKPNKQAEMRFKKFLHSQENSKEFFWNVEEDFKPVPECWIPAKEIEQLNGNPVPDENGHI |
GQPYLWARLDRKPNKQAEMRFKKFLHSQENSKEFFWNVEEDFKPVPECWIPAKEIEQLNGNPVPDENGHI | |
Retrocopy | GQPYLWARLDRKPNKQAEMRFKKFLHSQENSKEFFWNVEEDFKPVPECWIPAKEIEQLNGNPVPDENGHI |
Parental | PGWVPVEKNNKQYCWHSSVVNYEFEIALVLKHHPEDPGLLEISAVPLSDLLEQTLELIGTNINGNPYGLG |
P.WVPVEKNNKQYCWHSSVVNYEFEIALVLKHHPEDPGLLEISAVPL.DLLEQTLELIGTNINGNPYGLG | |
Retrocopy | PVWVPVEKNNKQYCWHSSVVNYEFEIALVLKHHPEDPGLLEISAVPLLDLLEQTLELIGTNINGNPYGLG |
Parental | SRKHPLHLLIPHGAFQIRSLPTLKHNDLLSWFEGCREGKIEGIVWH |
S.KHPLHLLIPHGAFQIRSLPTLKHNDLLS.FEGCREGKIEG...H | |
Retrocopy | SKKHPLHLLIPHGAFQIRSLPTLKHNDLLS*FEGCREGKIEGEFHH |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000011011 | 1 retrocopy |
retro_chof_1262 ,
|
Homo sapiens | ENSG00000133641 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000005986 | 1 retrocopy | |
Loxodonta africana | ENSLAFG00000013286 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000015860 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000005396 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000005277 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000006973 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000005256 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000014665 | 1 retrocopy |