RetrogeneDB ID: | retro_nleu_1905 | ||
Retrocopylocation | Organism: | Gibbon (Nomascus leucogenys) | |
Coordinates: | GL397315.1:2655463..2656038(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | C12ORF29 | ||
Ensembl ID: | ENSNLEG00000005396 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 83.94 % |
Parental protein coverage: | 58.77 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 1 |
Parental | DQPYLWARLDRKPNKQAEKRFKNFLHSKEN-PK-EFFWNVEEDFKLAPECWIPAKEIEQINGNPVPDENG |
DQP.L.ARLDRKPNKQ.EKRF..FLHS.EN.PK.....NVEEDFK...ECWIPAKEIEQINGNPVP.EN. | |
Retrocopy | DQP*LSARLDRKPNKQVEKRF*HFLHSNEN<PKIXXXXNVEEDFKPVLECWIPAKEIEQINGNPVPNENR |
Parental | HIPGWVPVEKNNKQYCWHSSVVNYEFEIALVLKHHPDDSGLLEISAVPLSDLLEQTLELIGTNINGNPYG |
.IP.WVPV.KNNKQYCWHSSVV.YEFEIALVLKHH.DDS.LLEI.AVPLSD.LEQTLEL.G.NINGNPYG | |
Retrocopy | YIPDWVPV*KNNKQYCWHSSVVSYEFEIALVLKHHADDSELLEITAVPLSDFLEQTLELTGKNINGNPYG |
Parental | LGSKKHPLHLLIPHGAFQIRNLPSLKHNDLLSWFEGCKEGKIEGIVWHCSDGC |
LGSKKHPLHLLIPHGAFQIRNLPSLKHNDLLS.FEGCK.GKIE.IVWH.SDGC | |
Retrocopy | LGSKKHPLHLLIPHGAFQIRNLPSLKHNDLLSSFEGCKVGKIEEIVWHRSDGC |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000011011 | 1 retrocopy | |
Homo sapiens | ENSG00000133641 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000005986 | 1 retrocopy | |
Loxodonta africana | ENSLAFG00000013286 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000015860 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000005396 | 1 retrocopy |
retro_nleu_1905 ,
|
Pan troglodytes | ENSPTRG00000005277 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000006973 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000005256 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000014665 | 1 retrocopy |