RetrogeneDB ID: | retro_hsap_3984 | ||
Retrocopylocation | Organism: | Human (Homo sapiens) | |
Coordinates: | 8:89497425..89497952(+) | ||
Located in intron of: | ENSG00000253553 | ||
Retrocopyinformation | Ensembl ID: | ENSG00000250962 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | C12orf29 | ||
Ensembl ID: | ENSG00000133641 | ||
Aliases: | None | ||
Description: | chromosome 12 open reading frame 29 [Source:HGNC Symbol;Acc:25322] |
Percent Identity: | 82.49 % |
Parental protein coverage: | 53.85 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 2 |
Parental | DQPYLWARLDRKPNKQAEKRFKNFLHSKENPK-EFFWNVEEDFKPAPECWIP-AKETEQINGNPVPDENG |
DQP.LWA.LDRK.NKQ.EKRF.N.LHS.ENPK.....NVEEDFKPA.ECWIP.AKE.EQIN.NPVP.EN. | |
Retrocopy | DQP*LWAQLDRKLNKQVEKRF*NLLHSNENPK>XXXXNVEEDFKPALECWIP>AKEIEQINRNPVPNENR |
Parental | HIPGWVPVEKNNKQYCWHSSVVNYEFEIALVLKHHPDDSGLLEISAVPLSDLLEQTLELIGTNINGNPYG |
.IP.WVPV.KNNKQYC.HSSVVNYEFEIALVLKHH.DDSGLLEI.AVPLSDLLEQTLE..G.NINGNPY. | |
Retrocopy | YIPDWVPV*KNNKQYC*HSSVVNYEFEIALVLKHHADDSGLLEITAVPLSDLLEQTLEITGKNINGNPYA |
Parental | LGSKKHPLHLLIPHGAFQIRNLPSLKHNDLVSWFEDC |
LGSKKHPLHLLIPHGAFQIRNLPSLKHND..SWFE.C | |
Retrocopy | LGSKKHPLHLLIPHGAFQIRNLPSLKHNDIMSWFEGC |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
bodymap2_adipose | 0 .00 RPM | 8 .43 RPM |
bodymap2_adrenal | 0 .00 RPM | 16 .93 RPM |
bodymap2_brain | 0 .00 RPM | 38 .11 RPM |
bodymap2_breast | 0 .00 RPM | 14 .92 RPM |
bodymap2_colon | 0 .00 RPM | 28 .19 RPM |
bodymap2_heart | 0 .00 RPM | 11 .24 RPM |
bodymap2_kidney | 0 .00 RPM | 26 .91 RPM |
bodymap2_liver | 0 .00 RPM | 12 .59 RPM |
bodymap2_lung | 0 .00 RPM | 23 .36 RPM |
bodymap2_lymph_node | 0 .00 RPM | 21 .53 RPM |
bodymap2_ovary | 0 .02 RPM | 24 .33 RPM |
bodymap2_prostate | 0 .00 RPM | 34 .12 RPM |
bodymap2_skeletal_muscle | 0 .00 RPM | 9 .33 RPM |
bodymap2_testis | 0 .00 RPM | 30 .28 RPM |
bodymap2_thyroid | 0 .00 RPM | 22 .22 RPM |
bodymap2_white_blood_cells | 0 .00 RPM | 16 .24 RPM |
Species | RetrogeneDB ID |
---|---|
Pan troglodytes | retro_ptro_2704 |
Gorilla gorilla | retro_ggor_2674 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000011011 | 1 retrocopy | |
Homo sapiens | ENSG00000133641 | 1 retrocopy |
retro_hsap_3984 ,
|
Gorilla gorilla | ENSGGOG00000005986 | 1 retrocopy | |
Loxodonta africana | ENSLAFG00000013286 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000015860 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000005396 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000005277 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000006973 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000005256 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000014665 | 1 retrocopy |
Library | Retrogene expression |
---|---|
CEU_NA11831 | 0 .00 RPM |
CEU_NA11843 | 0 .00 RPM |
CEU_NA11930 | 0 .00 RPM |
CEU_NA12004 | 0 .00 RPM |
CEU_NA12400 | 0 .00 RPM |
CEU_NA12751 | 0 .00 RPM |
CEU_NA12760 | 0 .00 RPM |
CEU_NA12827 | 0 .00 RPM |
CEU_NA12872 | 0 .00 RPM |
CEU_NA12873 | 0 .00 RPM |
FIN_HG00183 | 0 .00 RPM |
FIN_HG00277 | 0 .00 RPM |
FIN_HG00315 | 0 .00 RPM |
FIN_HG00321 | 0 .00 RPM |
FIN_HG00328 | 0 .00 RPM |
FIN_HG00338 | 0 .00 RPM |
FIN_HG00349 | 0 .00 RPM |
FIN_HG00375 | 0 .00 RPM |
FIN_HG00377 | 0 .00 RPM |
FIN_HG00378 | 0 .00 RPM |
GBR_HG00099 | 0 .00 RPM |
GBR_HG00111 | 0 .00 RPM |
GBR_HG00114 | 0 .00 RPM |
GBR_HG00119 | 0 .00 RPM |
GBR_HG00131 | 0 .00 RPM |
GBR_HG00133 | 0 .00 RPM |
GBR_HG00134 | 0 .00 RPM |
GBR_HG00137 | 0 .00 RPM |
GBR_HG00142 | 0 .00 RPM |
GBR_HG00143 | 0 .00 RPM |
TSI_NA20512 | 0 .00 RPM |
TSI_NA20513 | 0 .00 RPM |
TSI_NA20518 | 0 .00 RPM |
TSI_NA20532 | 0 .00 RPM |
TSI_NA20538 | 0 .00 RPM |
TSI_NA20756 | 0 .00 RPM |
TSI_NA20765 | 0 .00 RPM |
TSI_NA20771 | 0 .00 RPM |
TSI_NA20786 | 0 .00 RPM |
TSI_NA20798 | 0 .00 RPM |
YRI_NA18870 | 0 .00 RPM |
YRI_NA18907 | 0 .00 RPM |
YRI_NA18916 | 0 .00 RPM |
YRI_NA19093 | 0 .00 RPM |
YRI_NA19099 | 0 .00 RPM |
YRI_NA19114 | 0 .00 RPM |
YRI_NA19118 | 0 .00 RPM |
YRI_NA19213 | 0 .00 RPM |
YRI_NA19214 | 0 .00 RPM |
YRI_NA19223 | 0 .00 RPM |