RetrogeneDB ID: | retro_chof_1585 | ||
Retrocopylocation | Organism: | Sloth (Choloepus hoffmanni) | |
Coordinates: | scaffold_33207:2951..3331(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | COMMD10 | ||
Ensembl ID: | ENSCHOG00000008311 | ||
Aliases: | None | ||
Description: | COMM domain containing 10 [Source:HGNC Symbol;Acc:30201] |
Percent Identity: | 70. % |
Parental protein coverage: | 62.87 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 3 |
Parental | ISFILEQAVYHNVKPAALQQQLQNIHLRQEKAEPFVIAWSTMGQETVEKFRQRILAP-PRLETVGWQLNL |
I.F.....VY.NVKPAALQQ.L.N.HLRQ.K.E.FV.AWS..GQET.EKFRQR.LAP...LETVG.QL.L | |
Retrocopy | IHFRTGSTVYQNVKPAALQQ*LKNLHLRQGKTETFVNAWSLLGQETAEKFRQRSLAP<SQLETVGGQLSL |
Parental | QMA-HSAQANLKSPQAVLQLGVSNEDSKSLEKVLMEFSHKELFDFY-NKLETIQAQLDSL |
Q.A..SA.AN..SPQAVLQ.G.SN.DSKSLEKVLM.F.HKE.FDFY.N.LET.QAQL.SL | |
Retrocopy | QKA<SSAPANPNSPQAVLQPGGSNADSKSLEKVLMAFRHKEMFDFY>NELETTQAQLSSL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000008311 | 2 retrocopies |
retro_chof_1462, retro_chof_1585 ,
|
Cavia porcellus | ENSCPOG00000020474 | 1 retrocopy | |
Loxodonta africana | ENSLAFG00000011885 | 1 retrocopy | |
Microcebus murinus | ENSMICG00000006173 | 2 retrocopies | |
Myotis lucifugus | ENSMLUG00000010780 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000001698 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000004061 | 1 retrocopy |