RetrogeneDB ID: | retro_mluc_2087 | ||
Retrocopylocation | Organism: | Microbat (Myotis lucifugus) | |
Coordinates: | GL430022:1670761..1671204(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | COMMD10 | ||
Ensembl ID: | ENSMLUG00000010780 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 62.25 % |
Parental protein coverage: | 95.54 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 1 |
Parental | SMKKAVSLINAIDIGRFPRLLTRILQKLHLKAENSFSEEEEEKLQAAFSLEKQDLHLVLETISFILEQAV |
SMK.AV.L.NA..IG.FPRLLT....KLHLKAE.SFS.EE.....AAF....QD..LVL.TISF.LEQA. | |
Retrocopy | SMKQAVALVNATGIGWFPRLLT*FF-KLHLKAESSFSKEE*GEREAAF-FSRQDPYLVLDTISFLLEQAA |
Parental | YHNVKPAALQQQLENIHLAQDKAEAFVNTWSSMGQETVEKFRQRILAPHKLETVGWQLNLQMA-HSAQAK |
Y...KPAALQQQ.ENIHL.QD.AEAF...WSS...ETV.KFRQ..LA.HKL.T.GW.L..Q.A..SA.A. | |
Retrocopy | YRHWKPAALQQQVENIHLKQDNAEAFASAWSSTA*ETVKKFRQSSLASHKLATAGWLLDPQRA<SSAPAE |
Parental | LKSPQAVLQLG |
.K.PQA..Q.G | |
Retrocopy | PKPPQAGAQPG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000008311 | 2 retrocopies | |
Cavia porcellus | ENSCPOG00000020474 | 1 retrocopy | |
Loxodonta africana | ENSLAFG00000011885 | 1 retrocopy | |
Microcebus murinus | ENSMICG00000006173 | 2 retrocopies | |
Myotis lucifugus | ENSMLUG00000010780 | 1 retrocopy |
retro_mluc_2087 ,
|
Sarcophilus harrisii | ENSSHAG00000001698 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000004061 | 1 retrocopy |