RetrogeneDB ID: | retro_chof_1607 | ||
Retrocopylocation | Organism: | Sloth (Choloepus hoffmanni) | |
Coordinates: | scaffold_337638:621..1351(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | GDAP2 | ||
Ensembl ID: | ENSCHOG00000012907 | ||
Aliases: | None | ||
Description: | ganglioside induced differentiation associated protein 2 [Source:HGNC Symbol;Acc:18010] |
Percent Identity: | 84.96 % |
Parental protein coverage: | 56.15 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 3 |
Parental | KGDEALL-NCT-AIVNTSNETLTDKNPVSESIFMLAGPDLKEDLQKLK-GCRTGEAKLTKGFNLAARFII |
KGD.ALL.NCT..IVNTSNETL.DKNPVS...F.LAG.DLKEDLQ.LK.GCRTGEAKLTKGFNLAA.FII | |
Retrocopy | KGDVALL>NCT>SIVNTSNETLIDKNPVSDKYFTLAGHDLKEDLQFLK<GCRTGEAKLTKGFNLAAGFII |
Parental | HTVGPKYKSRYRTAAESSLYSCYRNVLQLAKEQSVSSVGFCVINSAKRG-PLEDATHIALRTVRRFLEIH |
HTVGPKYKS.Y.TAAE.SLYS.YRNVLQLAKEQSVS..GFCVINSAK.G..LEDATHIAL.TVRR.LEIH | |
Retrocopy | HTVGPKYKSHYHTAAEGSLYSHYRNVLQLAKEQSVSCIGFCVINSAKQGYSLEDATHIALPTVRRLLEIH |
Parental | GDTIEKVVFAVSDLEEAIYQKLLPLYFPRSLKEESLSLPYLPADIGNAEGEPVVPERQIRISEKPGAPED |
G.TIEK.VFAVS..EEAIYQKLLPLYFP.SLKEESLSLPYLPADIGNAEGEP.VP..QIRISEKPG.PED | |
Retrocopy | GETIEKIVFAVSVCEEAIYQKLLPLYFPGSLKEESLSLPYLPADIGNAEGEPGVPKWQIRISEKPGVPED |
Parental | DQEEGDEGLGVDLSFIGSHAFARMEGDIDKQRRLIL |
.QEE.DEGLGVDLSFIGSHAFA..EGDIDKQRRLIL | |
Retrocopy | NQEEEDEGLGVDLSFIGSHAFALLEGDIDKQRRLIL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000012907 | 2 retrocopies |
retro_chof_1607 , retro_chof_2559,
|
Echinops telfairi | ENSETEG00000004391 | 1 retrocopy | |
Felis catus | ENSFCAG00000003468 | 1 retrocopy | |
Mus musculus | ENSMUSG00000027865 | 1 retrocopy |