RetrogeneDB ID: | retro_chof_1777 | ||
Retrocopylocation | Organism: | Sloth (Choloepus hoffmanni) | |
Coordinates: | scaffold_38102:10776..11541(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SLC25A4 | ||
Ensembl ID: | ENSCHOG00000010542 | ||
Aliases: | None | ||
Description: | solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 4 [Source:HGNC Symbol;Acc:10990] |
Percent Identity: | 79.61 % |
Parental protein coverage: | 97.7 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | KQISAEKQYKGIIDCVVRIPKEQGFLSFWRGNLANVIRYFPTQALNFAFKDKYKQIFLGGVDRHKQFWRY |
KQI...KQ.KGIID.VV.IPKEQG.LSFWRGNLANVIRYFPT.ALNFAFKDKYKQIF..GVD...QFWRY | |
Retrocopy | KQITSDKQCKGIIDYVVHIPKEQGVLSFWRGNLANVIRYFPT*ALNFAFKDKYKQIFPSGVDKRTQFWRY |
Parental | FAGNLASGGAAGATSLCFVYPLDFARTRLAADVGKGLAQREFSGLGNCLTKIFKSDGLRGLYQGFNVSVQ |
FAGNLASGGA.GATSLCFVYPLDFA.TRLAAD.GK..A.REF.G.G.CL.KI.KSDG..GLYQGFNVSVQ | |
Retrocopy | FAGNLASGGATGATSLCFVYPLDFAPTRLAADLGKAGAEREFKGVGDCLVKIYKSDGIKGLYQGFNVSVQ |
Parental | GIIIYRAAYFGVYDTAKGMLPDPKNVHIIVSWMIAQTVTAVAGLVSYPFDTVRRRMMMQSGRKGADIMYT |
GIIIY.AAYF..YDTAKGMLPDPKN.HI..SW.I.Q.VTAVA.L.SYPFDT....MMMQSG.KG..I.YT | |
Retrocopy | GIIIYQAAYFTIYDTAKGMLPDPKNTHIFISWIIVQSVTAVAWLTSYPFDTAPHCMMMQSGCKGTEILYT |
Parental | GTIDCWRKIAKDEGAKAFFKGAWSNVLRGMGGAFVLVLYDEIKKF |
GT.DC.RKIA.DEG.KAFFKG.WS..LRGMGGAFVLVLYDEIKKF | |
Retrocopy | GTLDCGRKIARDEGSKAFFKGVWSSILRGMGGAFVLVLYDEIKKF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000013208 | 1 retrocopy | |
Choloepus hoffmanni | ENSCHOG00000010542 | 3 retrocopies |
retro_chof_1117, retro_chof_1777 , retro_chof_807,
|
Dasypus novemcinctus | ENSDNOG00000007258 | 3 retrocopies | |
Dipodomys ordii | ENSDORG00000013787 | 1 retrocopy | |
Erinaceus europaeus | ENSEEUG00000001021 | 2 retrocopies | |
Macropus eugenii | ENSMEUG00000008508 | 4 retrocopies | |
Microcebus murinus | ENSMICG00000010865 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000002594 | 1 retrocopy | |
Ochotona princeps | ENSOPRG00000005957 | 6 retrocopies | |
Pan troglodytes | ENSPTRG00000016646 | 9 retrocopies | |
Pteropus vampyrus | ENSPVAG00000015279 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000000932 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000004233 | 1 retrocopy |