RetrogeneDB ID: | retro_eeur_36 | ||
Retrocopylocation | Organism: | Hedgehog (Erinaceus europaeus) | |
Coordinates: | GeneScaffold_1977:434603..435303(-) | ||
Located in intron of: | ENSEEUG00000000590 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SLC25A4 | ||
Ensembl ID: | ENSEEUG00000001021 | ||
Aliases: | None | ||
Description: | solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 4 [Source:HGNC Symbol;Acc:10990] |
Percent Identity: | 77.02 % |
Parental protein coverage: | 78.52 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | LAGGVAAAVSKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCIVRIPKEQGFVSFWRGNLANVIRYF |
L..G.......TAV.PIERVKLLLQVQH.SKQI.A.KQYKGI.DC.V.IPKEQG..SFW.GNLA.VIRYF | |
Retrocopy | LRQGLPGRGGGTAVVPIERVKLLLQVQHSSKQITADKQYKGIMDCVVHIPKEQGVLSFWLGNLASVIRYF |
Parental | PTQALNFAFKDKYKQIFLGGVDRHKQFWRYFAGNLASGGAAGATSLCFVYPLDFARTRLAADVGKGSAQR |
PTQALNFAFKDKYKQIFL.GV....QFWRYFAG.LASGGAAG.TSLCF.YPLDFA.T.LAADVGK..A.. | |
Retrocopy | PTQALNFAFKDKYKQIFLEGVGKRTQFWRYFAGHLASGGAAGVTSLCFMYPLDFAHTLLAADVGKARAE* |
Parental | EFNGLGDCLTKIFKSDGLKGLYQGFSVSVQGIIIYRAAYFGVYDTAKGMLP-DPKNVHIIVSWMIAQSVT |
EF.GLGD.L.KI.KSDG.KGLYQGF.VSVQGIIIY.AAYFG..D...G..P.DPKN.HI.VSWMIAQSVT | |
Retrocopy | EFKGLGDYLVKIYKSDGTKGLYQGFNVSVQGIIIYWAAYFGICD-GQGNAP>DPKNTHISVSWMIAQSVT |
Parental | AVAGLVSYPFDTVRRRMMMQSGRKG |
AV.GL.SYPFDTVRRRMMMQSG.KG | |
Retrocopy | AVGGLTSYPFDTVRRRMMMQSGCKG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 4 .67 RPM | 134 .39 RPM |
SRP017611_kidney | 45 .20 RPM | 128 .46 RPM |
SRP017611_liver | 12 .06 RPM | 0 .00 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000013208 | 1 retrocopy | |
Choloepus hoffmanni | ENSCHOG00000010542 | 3 retrocopies | |
Dasypus novemcinctus | ENSDNOG00000007258 | 3 retrocopies | |
Dipodomys ordii | ENSDORG00000013787 | 1 retrocopy | |
Erinaceus europaeus | ENSEEUG00000001021 | 2 retrocopies |
retro_eeur_274, retro_eeur_36 ,
|
Macropus eugenii | ENSMEUG00000008508 | 4 retrocopies | |
Microcebus murinus | ENSMICG00000010865 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000002594 | 1 retrocopy | |
Ochotona princeps | ENSOPRG00000005957 | 6 retrocopies | |
Pan troglodytes | ENSPTRG00000016646 | 9 retrocopies | |
Pteropus vampyrus | ENSPVAG00000015279 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000000932 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000004233 | 1 retrocopy |