RetrogeneDB ID: | retro_pvam_892 | ||
Retrocopylocation | Organism: | Megabat (Pteropus vampyrus) | |
Coordinates: | scaffold_15404:22665..23547(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SLC25A4 | ||
Ensembl ID: | ENSPVAG00000015279 | ||
Aliases: | None | ||
Description: | solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 4 [Source:HGNC Symbol;Acc:10990] |
Percent Identity: | 80.87 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MGDQALSFVKDFLAGGIAAAVSKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQGFLSF |
M..Q..SF.KDFLAGGI.AA.SKTAVAPIERVKLLLQVQHASKQI.A.KQYKGI.DC.VRIP.EQG.LSF | |
Retrocopy | MMEQTISFAKDFLAGGITAAFSKTAVAPIERVKLLLQVQHASKQIAADKQYKGIVDCMVRIPREQGVLSF |
Parental | WRGNLANVIRYFPTQALNFAFKDKYKQIFLGGVDRHKQFWRYFAGNLASGGAAGATSLCFVYPLDFARTR |
WRGNLANV..Y.PTQALNFAFK.KYKQ.FLG.VD.H.QFWRYFAGNLASGGAAGATSLCFVYPLDFARTR | |
Retrocopy | WRGNLANVLYYIPTQALNFAFKGKYKQVFLGNVDKHTQFWRYFAGNLASGGAAGATSLCFVYPLDFARTR |
Parental | LAADVGKGASQREFSGLGDCLTKIFKSDGLKGLYQGFSVSVQGIIIYRAAYFGVYDTAKGMLPDPKNVHI |
LAADVGK...QREF..L.DCL.K..KSDG..GLYQGFSVSVQGI..YRAAYFGVYDTA.GMLPD....HI | |
Retrocopy | LAADVGKSVTQREFKSLRDCLMKTVKSDGIRGLYQGFSVSVQGIFFYRAAYFGVYDTARGMLPD----HI |
Parental | IVSWMIAQSVTAVAGLVSYPFDTVRRRMMMQSGRKGADIMYTGTLDCWRKIAKDEGAKAFFKGAWSNVLR |
.V.WMIAQSVTA.AG...YPFDTV.RRMMMQSGR..ADIMY.GT.DCW.KI.K.EG.KAFFKGAWSNVLR | |
Retrocopy | VVNWMIAQSVTAAAGTICYPFDTVKRRMMMQSGRRKADIMYRGTIDCWLKIFKEEGPKAFFKGAWSNVLR |
Parental | GMGGAFVLVLYDEIKKYV |
GMGGAFVLVLYDE.KK.. | |
Retrocopy | GMGGAFVLVLYDELKKVI |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000013208 | 1 retrocopy | |
Choloepus hoffmanni | ENSCHOG00000010542 | 3 retrocopies | |
Dasypus novemcinctus | ENSDNOG00000007258 | 3 retrocopies | |
Dipodomys ordii | ENSDORG00000013787 | 1 retrocopy | |
Erinaceus europaeus | ENSEEUG00000001021 | 2 retrocopies | |
Macropus eugenii | ENSMEUG00000008508 | 4 retrocopies | |
Microcebus murinus | ENSMICG00000010865 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000002594 | 1 retrocopy | |
Ochotona princeps | ENSOPRG00000005957 | 6 retrocopies | |
Pan troglodytes | ENSPTRG00000016646 | 9 retrocopies | |
Pteropus vampyrus | ENSPVAG00000014924 | 2 retrocopies | |
Pteropus vampyrus | ENSPVAG00000015279 | 1 retrocopy |
retro_pvam_892 ,
|
Sarcophilus harrisii | ENSSHAG00000000932 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000004233 | 1 retrocopy |