RetrogeneDB ID: | retro_chof_2175 | ||
Retrocopylocation | Organism: | Sloth (Choloepus hoffmanni) | |
Coordinates: | scaffold_55536:8344..8677(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RAB14 | ||
Ensembl ID: | ENSCHOG00000003669 | ||
Aliases: | None | ||
Description: | RAB14, member RAS oncogene family [Source:HGNC Symbol;Acc:16524] |
Percent Identity: | 50.45 % |
Parental protein coverage: | 50.93 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | LTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFA-ENGLLFLEASAKTGENVEDAFLEAAKKIYQN |
L.DAR.L...N.VIIL.GNK.DL.A.R.VT..EA..FA.EN.L.FLE.SA.TGENVE.AF...A.KI... | |
Retrocopy | LADARMLASQNIVIILCGNKKDLDADREVTFLEASRFAQENELTFLETSALTGENVEEAFVQCARKILNK |
Parental | IQDGSLDLNAAESGVQHKPSAPQGGRLTSEPQPQ-REGCGC |
I..G.LD.....SG.Q....A....R.....Q.Q....CGC | |
Retrocopy | IESGELDPERMGSGIQYGDAALRQLRSPRRAQAQSAQECGC |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000000710 | 3 retrocopies | |
Choloepus hoffmanni | ENSCHOG00000003669 | 1 retrocopy |
retro_chof_2175 ,
|
Choloepus hoffmanni | ENSCHOG00000013525 | 1 retrocopy | |
Choloepus hoffmanni | ENSCHOG00000013866 | 5 retrocopies | |
Cavia porcellus | ENSCPOG00000006688 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000009818 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000013654 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000012973 | 1 retrocopy | |
Pelodiscus sinensis | ENSPSIG00000003919 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000017800 | 1 retrocopy |