RetrogeneDB ID: | retro_chof_2254 | ||
Retrocopylocation | Organism: | Sloth (Choloepus hoffmanni) | |
Coordinates: | scaffold_61244:9842..10143(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CCDC25 | ||
Ensembl ID: | ENSCHOG00000012971 | ||
Aliases: | None | ||
Description: | coiled-coil domain containing 25 [Source:HGNC Symbol;Acc:25591] |
Percent Identity: | 89.32 % |
Parental protein coverage: | 55.19 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 2 |
Parental | GEKIE-DIPKEVLMDCAHLVKANSIQG-CKMNNVNVVYTPWSNLKKTADMDVGQIGFHRQKDVKIVTVEK |
GEKIE.DI.KEVLM.CAHLVKANSIQ..CKMNNV.VVYTP.SNLKKTADMDVGQIGFHRQKDVKIVTVEK | |
Retrocopy | GEKIE<DISKEVLMVCAHLVKANSIQF<CKMNNVIVVYTP*SNLKKTADMDVGQIGFHRQKDVKIVTVEK |
Parental | KVNEILNRLEKTKMERFPDLAAEKECRDREERN |
KVNEILNR.EKTKMER.PDLAAE.E.RDREERN | |
Retrocopy | KVNEILNR*EKTKMERIPDLAAEEERRDREERN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000012971 | 2 retrocopies |
retro_chof_2254 , retro_chof_847,
|
Dipodomys ordii | ENSDORG00000006595 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000006478 | 1 retrocopy | |
Homo sapiens | ENSG00000147419 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000009685 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000015976 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000018468 | 2 retrocopies | |
Pan troglodytes | ENSPTRG00000020109 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000000732 | 1 retrocopy |