RetrogeneDB ID: | retro_etel_434 | ||
Retrocopylocation | Organism: | Lesser hedgehog tenrec (Echinops telfairi) | |
Coordinates: | GeneScaffold_714:69186..69573(-) | ||
Located in intron of: | ENSETEG00000006133 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CCDC25 | ||
Ensembl ID: | ENSETEG00000006478 | ||
Aliases: | None | ||
Description: | coiled-coil domain containing 25 [Source:HGNC Symbol;Acc:25591] |
Percent Identity: | 73.28 % |
Parental protein coverage: | 64.77 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | SSSTYTIYMGKDKYENEDLIKYGWPEDIWFHVDKLS-AHVYLRLQKGENIEDIPQ-EKLTECAHLVKVS- |
.SS.YT.YMGKDKY.N..LIKYGWPED.WFHV.KL..AHVY.RLQKGENIEDI...E....C.HLVK... | |
Retrocopy | NSSAYTVYMGKDKYKNGGLIKYGWPEDTWFHVEKLF>AHVYPRLQKGENIEDIQR<EVRADCTHLVKANS |
Parental | ---CKMNNVNVVYTPWSNLKKTADMDVGQIGFHRQKDVKIVAVEKKVNEILNRLERTKMER |
...CKMNNVN.VYTPWSN.KKTAD.DVGQ.GFHRQKDVK.V..EKK.N.ILNRLE.TKMER | |
Retrocopy | IQGCKMNNVNLVYTPWSNRKKTADVDVGQVGFHRQKDVKTVTAEKKMNGILNRLEQTKMER |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000012971 | 2 retrocopies | |
Dipodomys ordii | ENSDORG00000006595 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000006478 | 1 retrocopy |
retro_etel_434 ,
|
Homo sapiens | ENSG00000147419 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000009685 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000015976 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000018468 | 2 retrocopies | |
Pan troglodytes | ENSPTRG00000020109 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000000732 | 1 retrocopy |