RetrogeneDB ID:

retro_chof_2312

Retrocopy
location
Organism:Sloth (Choloepus hoffmanni)
Coordinates:scaffold_65367:94..363(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:None
Ensembl ID:ENSCHOG00000002184
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_chof_2312
CTTGGAGAAATTTATTCAAAACTTTTAGATCACATACCAGATACTCAAGGTGAAACCCATTATTTTGTGAAAATTTTTAA
AGAAAATTTGGTCTTCAAGAAATGAGAGTTCTTGAAAATTTGAAGAATATGATCCACAAAACAAATTATAAAATTTTTCC
CAAATGAGGAGAGATGGTGCAGGGCAACATGAAACAAGTTATCCAGAGATTGCAGTCTGTAGACTCTGTAGATTGCAGTC
ACTCAGTCTGTAGACTCCAACAAAGGGAG

ORF - retro_chof_2312 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 56.04 %
Parental protein coverage: 60.4 %
Number of stop codons detected: 1
Number of frameshifts detected 1


Retrocopy - Parental Gene Alignment:

ParentalLGEIHSRLLDHRPVIQGEIRYFVKEFEE-KRGLREMRVLENLKNMIHKTNEQTLPKCGETVQDNLNQILQ
LGEI.S.LLDH.P..QGE..YFVK.F.E.K.GL.EMRVLENLKNMIHKTN....PK.GE.VQ.N..Q..Q
RetrocopyLGEIYSKLLDHIPDTQGETHYFVKIFKE<KFGLQEMRVLENLKNMIHKTNYKIFPK*GEMVQGNMKQVIQ
ParentalRXXXXXXXVCRLQQREQEQRK
R........C........QR.
RetrocopyRLQSVDSVDCSHSVCRLQQRE

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Choloepus hoffmanni was not studied using RNA-Seq expression data.
Choloepus hoffmanni was not studied using ChIP-Seq data.
Choloepus hoffmanni was not studied using EST data.
Choloepus hoffmanni was not studied using FANTOM5 data.
retro_chof_2312 was not experimentally validated.

Retrocopy orthology:
Choloepus hoffmanni does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 3 parental genes, and 7 retrocopies.

Species Parental gene accession Retrocopies number
Choloepus hoffmanni ENSCHOG00000002184 4 retrocopies
Callithrix jacchus ENSCJAG000000213222 retrocopies
Microcebus murinus ENSMICG000000059661 retrocopy



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