RetrogeneDB ID:

retro_mmur_31

Retrocopy
location
Organism:Mouse Lemur (Microcebus murinus)
Coordinates:GeneScaffold_558:135597..136488(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:ENSMICG00000007363
Aliases:None
Status:KNOWN_PROTEIN_CODING
Parental gene
information
Parental gene summary:
Parental gene symbol:None
Ensembl ID:ENSMICG00000005966
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_mmur_31
TTAAAGTTTTTCAAGCCTGGCCAAGAAGCTGTGAAGTACCAGGGTCCTCGGGACTTCCAGACGCTGGAAAACTGGATGCT
GCAGACGCTGAACCAGGAGCCGGCGACACCAGAGCCAGCAGTAGAACCGCCCAGAGCCCCTGAGCTCAAGCAGGGGCTGT
ACGAGCTCTCAGCGAGCAACTTTGAGCCGCATGTCGCACAAGGCGACCACTTTATCAAGTTCTTCGCTCCGTGGTGTGGT
CACTGCAAAGCCCTGGCTCCGACCTGGGAGCAGCTGGCGCTGGGCCTTGAACATTCCGAAACTGTCAAGATTGGCAAGGT
CGATTGTACACAGCACTACGAGCTCTGCTCGGGGAACCAGGTCCGCGGCTATCCCACTCTGCTGTGGTTCCGAGACGGGA
AGAAGGTTGACCAGTACAAAGGGAAGCGGGATTTGGAGTCCCTGAGAGAGTACGTGGAGTCACAGCTGCAGAGGACAGAG
CCGGGCGCCCCAGAGACCGAGACTGCTGCGCCCTCGGACGCCCCCGGGCTGGCCGCCAAGCCCGAGGCCAGCAAGGGCAC
TGTGTTGGCGCTCACTGAAAATAACTTCGATGACACTATTGCAGAAGGAATAACCTTTGTCAAGTTTTATGCTCCATGGT
GTGGTCATTGTAAGAATTTGGCTCCTACCTGGGAGCAACTTGCTAAAAAGGAATTCCCTGGTTTGGCAGAGGTCAAGATC
GCTGAAGTAGACTGCACGGCAGAGCGGAATACTTGCAGCAAGTACTCGGTACGAGGCTATCCCACGTTGTTGCTTTTCCG
TGGAGGGCAGAAAGTCAGTGAGCACAGTGGAGGGAGAGACCTCGAATCGTTACACCGCTTTGTCCTGGGCCAGGCCAAAG
ACGAGCTGTAG

ORF - retro_mmur_31 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 98.65 %
Parental protein coverage: 85.55 %
Number of stop codons detected: 0
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalLKFFKPGQEAVKYQGPRDFQTLENWMLQTLNQEPATPEPAVEPPRAPELKQGLYELSASNFEPHVAQGDH
LKFFKPGQEAVKYQGPRDFQTLENWMLQTLNQEPATPEPAVEPPRAPELKQGLYELSASNFEPHVAQGDH
RetrocopyLKFFKPGQEAVKYQGPRDFQTLENWMLQTLNQEPATPEPAVEPPRAPELKQGLYELSASNFEPHVAQGDH
ParentalFIKFFAPWCGHCKALAPTWEQLALGLEHSETVKIGKVDCTQHYELCSGNQVRGYPTLLWFRDGKKVDQYK
FIKFFAPWCGHCKALAPTWEQLALGLEHSETVKIGKVDCTQHYELCSGNQVRGYPTLLWFRDGKKVDQYK
RetrocopyFIKFFAPWCGHCKALAPTWEQLALGLEHSETVKIGKVDCTQHYELCSGNQVRGYPTLLWFRDGKKVDQYK
ParentalGKRDLESLREYVESQLQRTEPGAPETETAAPSEAPGLAAEPEASKGTVLALTENNFDDTIAEGLTFVKFY
GKRDLESLREYVESQLQRTEPGAPETETAAPS.APGLAA.PEASKGTVLALTENNFDDTIAEG.TFVKFY
RetrocopyGKRDLESLREYVESQLQRTEPGAPETETAAPSDAPGLAAKPEASKGTVLALTENNFDDTIAEGITFVKFY
ParentalAPWCGHCKNLAPTWEELAKKEFPGLAEVKIAEVDCTAERNTCSKYSVRGYPTLLLFRGGQKVSEHSGGRD
APWCGHCKNLAPTWE.LAKKEFPGLAEVKIAEVDCTAERNTCSKYSVRGYPTLLLFRGGQKVSEHSGGRD
RetrocopyAPWCGHCKNLAPTWEQLAKKEFPGLAEVKIAEVDCTAERNTCSKYSVRGYPTLLLFRGGQKVSEHSGGRD
ParentalLESLHRFVLGQAKDEL
LESLHRFVLGQAKDEL
RetrocopyLESLHRFVLGQAKDEL

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Microcebus murinus was not studied using RNA-Seq expression data.
Microcebus murinus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_mmur_31 retrocopy.
Microcebus murinus was not studied using FANTOM5 data.
retro_mmur_31 was not experimentally validated.

Retrocopy orthology:
Microcebus murinus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 3 parental genes, and 7 retrocopies.

Species Parental gene accession Retrocopies number
Choloepus hoffmanni ENSCHOG000000021844 retrocopies
Callithrix jacchus ENSCJAG000000213222 retrocopies
Microcebus murinus ENSMICG00000005966 1 retrocopy
retro_mmur_31 ,



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