RetrogeneDB ID: | retro_chof_2387 | ||
Retrocopylocation | Organism: | Sloth (Choloepus hoffmanni) | |
Coordinates: | scaffold_70713:5340..5878(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PSMD14 | ||
Ensembl ID: | ENSCHOG00000002556 | ||
Aliases: | None | ||
Description: | proteasome (prosome, macropain) 26S subunit, non-ATPase, 14 [Source:HGNC Symbol;Acc:16889] |
Percent Identity: | 88.33 % |
Parental protein coverage: | 60.27 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | QSGTGVSVEAVDPVFQAKMLDMLKQTGRPEMVVGWYHSHPGF-GCWLSGVDINTQQSFEALSERAVAVVV |
QSGTGVSVEAVDPVFQ.KMLD.L.QTGRPEM..GWYHSHPGF..C.LSGVDINTQ.SFEALSERA.AVVV | |
Retrocopy | QSGTGVSVEAVDPVFQIKMLDILNQTGRPEMIIGWYHSHPGF>AC*LSGVDINTQRSFEALSERAMAVVV |
Parental | DPIQSVKGKVVIDAFRLINANMMVLGHEPRQTTSNLGHLNKPSIQALIHGLNRHYYSITINYRKNELEQK |
DPIQS.KGKVVIDAFRLINANMMVLGH.PRQTTSNL.HLNKPSIQALI.GLNRHYYSITINY.KNELEQK | |
Retrocopy | DPIQSAKGKVVIDAFRLINANMMVLGHKPRQTTSNLDHLNKPSIQALINGLNRHYYSITINYWKNELEQK |
Parental | MLLNLHKKSWMEGLTLQDYSEHCKHNESVVKEMLELAKNY |
MLLNL.KKSWMEGLTLQDY.EH..HNESVVKEML.L.KNY | |
Retrocopy | MLLNLYKKSWMEGLTLQDYREHYIHNESVVKEMLALVKNY |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000002556 | 1 retrocopy |
retro_chof_2387 ,
|
Callithrix jacchus | ENSCJAG00000005572 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000015747 | 1 retrocopy | |
Mus musculus | ENSMUSG00000026914 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000004933 | 2 retrocopies | |
Pongo abelii | ENSPPYG00000012881 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000012575 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000004911 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000014118 | 1 retrocopy |