RetrogeneDB ID: | retro_mmus_701 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | 11:30528404..30528973(+) | ||
Located in intron of: | ENSMUSG00000060923 | ||
Retrocopyinformation | Ensembl ID: | ENSMUSG00000081712 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Psmd14 | ||
Ensembl ID: | ENSMUSG00000026914 | ||
Aliases: | Psmd14, 2610312C03Rik, 3200001M20Rik, AA986732, Pad1, Poh1, rpm11 | ||
Description: | proteasome (prosome, macropain) 26S subunit, non-ATPase, 14 [Source:MGI Symbol;Acc:MGI:1913284] |
Percent Identity: | 87.96 % |
Parental protein coverage: | 61.29 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 1 |
Parental | VIDVFAMPQSGTGVSVEAVDPVFQAKMLDMLKQTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALSE |
VIDVFAMPQS.TGVSVEAVDPVFQ.KML.ML.QTGRPEMVVG.Y.S.PGFGC.LSGV..NTQQS.EALSE | |
Retrocopy | VIDVFAMPQS*TGVSVEAVDPVFQDKMLCMLRQTGRPEMVVG*YQSFPGFGC*LSGVHVNTQQSSEALSE |
Parental | RAVAVVVDPIQSVKGKVVIDA-FRLINANMMVLGHEPRQTTSNLGHLNKPSIQALIHGLNRHYYSITINY |
RAVAVVVDPIQSVKGKVVIDA...LINANMMVLGHEPRQ.TSNLGHLNKPSIQAL.H.LNRHYYSI.INY | |
Retrocopy | RAVAVVVDPIQSVKGKVVIDA<LLLINANMMVLGHEPRQITSNLGHLNKPSIQALVHRLNRHYYSININY |
Parental | RKNELEQKMLLNLHKKSWMEGLTLQDYSEHCKHNESVVKEMLELAKNYNKA |
RKNEL.QKMLLNLHKKSWMEGL.LQDYSEHCK.NESVVKEML.LA.NYNKA | |
Retrocopy | RKNELGQKMLLNLHKKSWMEGLALQDYSEHCKDNESVVKEMLKLA*NYNKA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .14 RPM | 56 .91 RPM |
SRP007412_cerebellum | 0 .26 RPM | 49 .41 RPM |
SRP007412_heart | 0 .50 RPM | 29 .67 RPM |
SRP007412_kidney | 0 .46 RPM | 43 .64 RPM |
SRP007412_liver | 0 .00 RPM | 38 .40 RPM |
SRP007412_testis | 0 .14 RPM | 24 .33 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000002556 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000005572 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000015747 | 1 retrocopy | |
Mus musculus | ENSMUSG00000026914 | 1 retrocopy |
retro_mmus_701 ,
|
Otolemur garnettii | ENSOGAG00000004933 | 2 retrocopies | |
Pongo abelii | ENSPPYG00000012881 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000012575 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000004911 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000014118 | 1 retrocopy |